X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FFileParse.java;fp=src%2Fjalview%2Fio%2FFileParse.java;h=764715fab08e125bd82e5ff1c3787bf972c8753b;hb=530cd3222902146bb95bddcf11a21150f8972183;hp=8e9a49c3650580717496bf6a736c4544beaf966a;hpb=05dae6e20679182b50293ab33705f596f543d720;p=jalview.git

diff --git a/src/jalview/io/FileParse.java b/src/jalview/io/FileParse.java
index 8e9a49c..764715f 100755
--- a/src/jalview/io/FileParse.java
+++ b/src/jalview/io/FileParse.java
@@ -22,8 +22,17 @@ package jalview.io;
 
 import jalview.util.MessageManager;
 
-import java.io.*;
-import java.net.*;
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.FileInputStream;
+import java.io.FileReader;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.InputStreamReader;
+import java.io.Reader;
+import java.io.StringReader;
+import java.net.MalformedURLException;
+import java.net.URL;
 import java.util.zip.GZIPInputStream;
 
 /**
@@ -99,7 +108,9 @@ public class FileParse
       throw new Error(MessageManager.getString("error.implementation_error_null_fileparse"));
     }
     if (from == this)
+    {
       return;
+    }
     index = ++from.index;
     inFile = from.inFile;
     suffixSeparator = from.suffixSeparator;
@@ -157,7 +168,7 @@ public class FileParse
         {
           warningMessage = "Failed  to resolve as a GZ stream ("
                   + x.getMessage() + ")";
-          x.printStackTrace();
+          // x.printStackTrace();
         }
         ;
       }
@@ -281,7 +292,9 @@ public class FileParse
         {
           checkURLSource(fileStr);
           if (suffixSeparator == '#')
+           {
             extractSuffix(fileStr); // URL lref is stored for later reference.
+          }
         } catch (IOException e)
         {
           String suffixLess = extractSuffix(fileStr);
@@ -323,7 +336,9 @@ public class FileParse
       {
         String suffixLess = extractSuffix(fileStr);
         if (suffixLess != null)
+        {
           is = getClass().getResourceAsStream("/" + suffixLess);
+        }
       }
       if (is != null)
       {
@@ -371,7 +386,9 @@ public class FileParse
   public String nextLine() throws IOException
   {
     if (!error)
+    {
       return dataIn.readLine();
+    }
     throw new IOException(MessageManager.formatMessage("exception.invalid_source_stream", new String[]{errormessage}));
   }