X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FHtmlSvgOutput.java;fp=src%2Fjalview%2Fio%2FHtmlSvgOutput.java;h=7e02118acbeb040e69cac01bd93d8dcf2a0d93b4;hb=294cc8b0cf3d28310a95e1ffdb2a0f871304b70d;hp=db34c2fccbcd19e9a4b871427a67988690f5c293;hpb=263ae64817c7604150961e1c9c76554936ab994b;p=jalview.git

diff --git a/src/jalview/io/HtmlSvgOutput.java b/src/jalview/io/HtmlSvgOutput.java
index db34c2f..7e02118 100644
--- a/src/jalview/io/HtmlSvgOutput.java
+++ b/src/jalview/io/HtmlSvgOutput.java
@@ -1,10 +1,9 @@
 package jalview.io;
 
+import jalview.api.FeatureRenderer;
 import jalview.datamodel.SequenceI;
 import jalview.gui.AlignViewport;
 import jalview.gui.AlignmentPanel;
-import jalview.gui.AnnotationPanel;
-import jalview.gui.FeatureRenderer;
 import jalview.gui.HTMLOptions;
 import jalview.math.AlignmentDimension;
 import jalview.util.MessageManager;
@@ -27,15 +26,12 @@ public class HtmlSvgOutput
   FeatureRenderer fr;
   AlignmentPanel ap;
 
-  AnnotationPanel annotationPanel;
 
   public HtmlSvgOutput(File file, AlignmentPanel ap)
   {
-
-      this.av = ap.av;
-      this.ap = ap;
-    av.setFeatureRenderer(new FeatureRenderer(ap));
-      this.annotationPanel = ap.getAnnotationPanel();
+    this.av = ap.av;
+    this.ap = ap;
+    fr = ap.cloneFeatureRenderer();
     generateHtmlSvgOutput(file);
   }
 
@@ -101,7 +97,7 @@ public class HtmlSvgOutput
 
       String titleSvgData = g1.getSVGDocument();
       String alignSvgData = g2.getSVGDocument();
-      String jsonData = JSONFile.getJSONData(av);
+      String jsonData = JSONFile.getJSONData(ap);
       String htmlData = getHtml(titleSvgData, alignSvgData, jsonData);
 
       out.write(htmlData.getBytes());