X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FIdentifyFile.java;fp=src%2Fjalview%2Fio%2FIdentifyFile.java;h=e65101d9668b831656bdbe4d291d73e1bfd730e8;hb=2e9e0527943d0c42a6059ebbb8e7e69346c38206;hp=ff959b0d79b281f5bb078e500bc768e270931c93;hpb=e4843176d8337fc165c1b93ae6c161cb29521f6d;p=jalview.git

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index ff959b0..e65101d 100755
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -127,14 +127,21 @@ public class IdentifyFile
         {
           // jar files are special - since they contain all sorts of random
           // characters.
-          if (source.inFile != null)
+          if (source.inFile != null || source.getDataName() != null)
           {
-            String fileStr = source.inFile.getName();
+            String fileStr = source.inFile == null ? source.getDataName()
+                    : source.inFile.getName();
             // possibly a Jalview archive.
             if (fileStr.lastIndexOf(".jar") > -1
                     || fileStr.lastIndexOf(".zip") > -1)
             {
               reply = FileFormat.Jalview;
+              // TODO shouldn't there be a break here?
+            }
+            else if (fileStr.lastIndexOf(".bam") > -1)
+            {
+              reply = FileFormat.Bam;
+              break;
             }
           }
           if (!lineswereskipped && data.startsWith("PK"))