X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FIdentifyFile.java;h=15cbe4e41aa8a406ce025673b130f61fa140fce8;hb=c794c5033adeee182b03a5ea92c0a7495a29661f;hp=b3124745d3596ff562e65e291027505ba83bfe08;hpb=e1dbbc5edc07f65706eeb1dda9f4c9bcdee9d3a5;p=jalview.git

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index b312474..15cbe4e 100755
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -185,6 +185,11 @@ public class IdentifyFile
           reply = FileFormat.ScoreMatrix;
           break;
         }
+        if (data.startsWith("HMMER3"))
+        {
+          reply = FileFormat.HMMER3;
+          break;
+        }
         if (data.startsWith("H ") && !aaIndexHeaderRead)
         {
           aaIndexHeaderRead = true;