X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FIdentifyFile.java;h=b8a4d6a10227301d7554c73c9541bf482ab804e9;hb=586ade46bdcd05ff028a1cff82c3c527326d28ec;hp=df40ec13df84a55ba1a28c5551bc0446db03fd44;hpb=54f6fe32b978af0932428981a56c9960b0df44a7;p=jalview.git

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index df40ec1..b8a4d6a 100755
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -185,6 +185,11 @@ public class IdentifyFile
           reply = FileFormat.ScoreMatrix;
           break;
         }
+        if (data.startsWith("HMMER3"))
+        {
+          reply = FileFormat.HMMER3;
+          break;
+        }
         if (data.startsWith("H ") && !aaIndexHeaderRead)
         {
           aaIndexHeaderRead = true;