X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FIdentifyFile.java;h=bc91e09365ec62d51056ba79de7a5d592056148e;hb=74b531f56bbaad5c5e06a4744980256fe8110923;hp=89fc3cd2a1f31fe6a539541cdf890f64aafd8773;hpb=8b27085fa7fc5f2877e078421284c2636b85b8c6;p=jalview.git

diff --git a/src/jalview/io/IdentifyFile.java b/src/jalview/io/IdentifyFile.java
index 89fc3cd..bc91e09 100755
--- a/src/jalview/io/IdentifyFile.java
+++ b/src/jalview/io/IdentifyFile.java
@@ -74,6 +74,13 @@ public class IdentifyFile
     // preserves original behaviour prior to version 2.3
   }
 
+  public FileFormatI identify(AlignmentFileI file, boolean closeSource)
+          throws IOException
+  {
+    FileParse fp = new FileParse(file.getInFile(), file.getDataSourceType());
+    return identify(fp, closeSource);
+  }
+
   /**
    * Identify contents of source, closing it or resetting source to start
    * afterwards.
@@ -343,6 +350,7 @@ public class IdentifyFile
               .println("File Identification failed! - Empty file was read.");
       throw new FileFormatException("EMPTY DATA FILE");
     }
+    System.out.println("File format identified as " + reply.toString());
     return reply;
   }