X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FJSONFile.java;fp=src%2Fjalview%2Fio%2FJSONFile.java;h=28b8ed22f1b877de07fededa54487a21e0b022f2;hb=7ce1382b998c007a78c9b33a3dc331e966eebc4b;hp=fcedb2b6abbfd84b739681c167042f6584fd13a5;hpb=e2d6753e8cf3c5eaf8bccf34f4f5e9d651e9cb8e;p=jalview.git

diff --git a/src/jalview/io/JSONFile.java b/src/jalview/io/JSONFile.java
index fcedb2b..28b8ed2 100644
--- a/src/jalview/io/JSONFile.java
+++ b/src/jalview/io/JSONFile.java
@@ -37,8 +37,6 @@ public class JSONFile extends AlignFile
 {
   private ColourSchemeI colourScheme;
 
-  // private static boolean seqFeaturesEnabled;
-
   private String jalviewVersion;
 
   private String webStartLaunchServletUrl;
@@ -55,8 +53,6 @@ public class JSONFile extends AlignFile
 
   private FeaturesDisplayedI displayedFeatures;
 
-  // private AlignViewportI viewport;
-
   private FeatureRenderer fr;
 
   private JSONExportSettings jsonExportSettings;
@@ -112,7 +108,6 @@ public class JSONFile extends AlignFile
         setDisplayedFeatures(getViewport().getFeaturesDisplayed());
         showSeqFeatures = getViewport().isShowSequenceFeatures();
         fr = getViewport().getFeatureRenderer();
-        // setSeqFeaturesEnabled(viewport.isShowSequenceFeatures());
       }
 
       int count = 0;
@@ -298,7 +293,6 @@ public class JSONFile extends AlignFile
         Boolean showFeatures = Boolean.valueOf(jvSettingsJsonObj.get(
                 "showSeqFeatures").toString());
         setColourScheme(getJalviewColorScheme(jsColourScheme));
-        // JSONFile.setSeqFeaturesEnabled(showFeatures);
         setShowSeqFeatures(showFeatures);
       }
 
@@ -467,7 +461,7 @@ public class JSONFile extends AlignFile
     return jalviewColor;
   }
 
-  public void LoadAlignmentFeatures(AlignFrame af)
+  public void applySettingsToAlignFrame(AlignFrame af)
   {
     af.setShowSeqFeatures(isShowSeqFeatures());
     af.changeColour(getColourScheme());