X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FModellerDescription.java;fp=src%2Fjalview%2Fio%2FModellerDescription.java;h=e184d749b91f78e67f02dd9d61df3b4a8a8a59d3;hb=9c98d4bd666346f6ad3892c5394b7da3be82d93e;hp=d66fe6c5be246bb21fb8a18b0274e345c3b35433;hpb=c7b2143c9cf7c5e05ad63251f7d3910751b16d20;p=jalview.git diff --git a/src/jalview/io/ModellerDescription.java b/src/jalview/io/ModellerDescription.java index d66fe6c..e184d74 100755 --- a/src/jalview/io/ModellerDescription.java +++ b/src/jalview/io/ModellerDescription.java @@ -99,8 +99,7 @@ public class ModellerDescription private resCode validResidueCode(String field) { Integer val = null; - Regex r = new Regex( - "\\s*((([-0-9]+).?)|FIRST|LAST|@)"); + Regex r = new Regex("\\s*((([-0-9]+).?)|FIRST|LAST|@)"); if (!r.search(field)) { @@ -280,15 +279,14 @@ public class ModellerDescription List dbr = seq.getDatasetSequence().getDBRefs(); for (int i = 0, ni = dbr.size(); i < ni; i++) { - DBRefEntry dbri = dbr.get(i); + DBRefEntry dbri = dbr.get(i); if (dbri != null) { // JBPNote PDB dbRefEntry needs properties to propagate onto // ModellerField // JBPNote Need to get info from the user about whether the sequence // is the one being modelled, or if it is a template. - if (dbri.getSource() - .equals(jalview.datamodel.DBRefSource.PDB)) + if (dbri.getSource().equals(jalview.datamodel.DBRefSource.PDB)) { fields.put(Fields[LOCALID], dbri.getAccessionId()); t = 2;