X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FPIRFile.java;h=3f0fea0034f6b38c241a38ac4e8519b295d4a4ce;hb=a83adb45bdf9554e270921b4baad94defd314b36;hp=d9ed5166d9f88d04d0818007dc6114cd8f297b7f;hpb=d4ec118f86b5c9dee801e743c46aaacc7bb521d1;p=jalview.git

diff --git a/src/jalview/io/PIRFile.java b/src/jalview/io/PIRFile.java
index d9ed516..3f0fea0 100755
--- a/src/jalview/io/PIRFile.java
+++ b/src/jalview/io/PIRFile.java
@@ -20,18 +20,16 @@
  */
 package jalview.io;
 
+import jalview.bin.Cache;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceI;
 import jalview.util.Comparison;
 
 import java.io.IOException;
-import java.util.Vector;
 
 public class PIRFile extends AlignFile
 {
-  public static boolean useModellerOutput = false;
-
-  Vector words = new Vector(); // Stores the words in a line after splitting
+  // Vector words = new Vector(); // Stores the words in a line after splitting
 
   public PIRFile()
   {
@@ -111,7 +109,7 @@ public class PIRFile extends AlignFile
     StringBuffer out = new StringBuffer();
     int i = 0;
     ModellerDescription md;
-
+    boolean useModellerOutput = Cache.getDefault("PIR_MODELLER", false);
     while ((i < s.length) && (s[i] != null))
     {
       String seq = s[i].getSequenceAsString();
@@ -147,7 +145,6 @@ public class PIRFile extends AlignFile
       }
       else
       {
-
         if (useModellerOutput)
         {
           out.append(">P1;" + s[i].getName());