X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FPIRFile.java;h=5f5c23c4c834e4f79788f56bb3a93e454ba65996;hb=8dbeca869699c196f4239fb1f8909d5a4c23ee86;hp=cd3c7a0204447d249f7f0232b584b074e79c04ec;hpb=91dc50b1717ebddc0b350333cfbaaa4f409f31e7;p=jalview.git

diff --git a/src/jalview/io/PIRFile.java b/src/jalview/io/PIRFile.java
index cd3c7a0..5f5c23c 100755
--- a/src/jalview/io/PIRFile.java
+++ b/src/jalview/io/PIRFile.java
@@ -46,6 +46,7 @@ public class PIRFile extends AlignFile
     super(source);
   }
 
+  @Override
   public void parse() throws IOException
   {
     StringBuffer sequence;
@@ -100,6 +101,7 @@ public class PIRFile extends AlignFile
     }
   }
 
+  @Override
   public String print()
   {
     return print(getSeqsAsArray());
@@ -174,7 +176,8 @@ public class PIRFile extends AlignFile
           }
         }
       }
-      int nochunks = (seq.length() / len) + 1;
+      int nochunks = (seq.length() / len)
+              + (seq.length() % len > 0 ? 1 : 0);
 
       for (int j = 0; j < nochunks; j++)
       {