X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FPfamFile.java;h=1f92d5722b33b1c5a7ffbbbc42423d0ab25e0541;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=c5ef4f72fbe9ea93cdadc47cf276986923bf79b1;hpb=2bd43f464e725844b02a106c2d2f187c2c3655a6;p=jalview.git diff --git a/src/jalview/io/PfamFile.java b/src/jalview/io/PfamFile.java index c5ef4f7..1f92d57 100755 --- a/src/jalview/io/PfamFile.java +++ b/src/jalview/io/PfamFile.java @@ -1,28 +1,34 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8) - * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2) + * Copyright (C) 2015 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.io; -import java.io.*; -import java.util.*; +import jalview.datamodel.Sequence; +import jalview.datamodel.SequenceI; +import jalview.util.Format; +import jalview.util.MessageManager; - -import jalview.datamodel.*; -import jalview.util.*; +import java.io.IOException; +import java.util.Hashtable; +import java.util.StringTokenizer; +import java.util.Vector; public class PfamFile extends AlignFile { @@ -98,7 +104,8 @@ public class PfamFile extends AlignFile if (noSeqs < 1) { - throw new IOException("No sequences found (PFAM input)"); + throw new IOException( + MessageManager.getString("exception.pfam_no_sequences_found")); } for (i = 0; i < headers.size(); i++)