X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FSequenceAnnotationReport.java;fp=src%2Fjalview%2Fio%2FSequenceAnnotationReport.java;h=5ada3554e45fee13d1dff040e8bd785ab3a000f3;hb=1903e771d3dae79e9a57fcc1147efd37e8a51421;hp=6b826712db05ff9503209a7999a09128cf6a6cf2;hpb=061c304150f3db1f126b2e8e274d3f7da4846887;p=jalview.git

diff --git a/src/jalview/io/SequenceAnnotationReport.java b/src/jalview/io/SequenceAnnotationReport.java
index 6b82671..5ada355 100644
--- a/src/jalview/io/SequenceAnnotationReport.java
+++ b/src/jalview/io/SequenceAnnotationReport.java
@@ -21,6 +21,7 @@
 package jalview.io;
 
 import jalview.api.FeatureColourI;
+import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.DBRefEntry;
 import jalview.datamodel.DBRefSource;
 import jalview.datamodel.SequenceFeature;
@@ -353,12 +354,27 @@ public class SequenceAnnotationReport
       sb.append("<br>").append(tmp);
       maxWidth = Math.max(maxWidth, tmp.length());
     }
+
     SequenceI ds = sequence;
     while (ds.getDatasetSequence() != null)
     {
       ds = ds.getDatasetSequence();
     }
 
+    /*
+     * add any annotation scores
+     */
+    AlignmentAnnotation[] anns = ds.getAnnotation();
+    for (int i = 0; anns != null && i < anns.length; i++)
+    {
+      AlignmentAnnotation aa = anns[i];
+      if (aa != null && aa.hasScore() && aa.sequenceRef != null)
+      {
+        sb.append("<br>").append(aa.label).append(": ")
+                .append(aa.getScore());
+      }
+    }
+
     if (showDbRefs)
     {
       maxWidth = Math.max(maxWidth, appendDbRefs(sb, ds, summary));