X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FSimpleBlastFile.java;fp=src%2Fjalview%2Fio%2FSimpleBlastFile.java;h=1b7254593c1f4057be96b9d0ae3a1c09565f7784;hb=2595e9d4ee0dbbd3406a98c4e49a61ccde806479;hp=f4dc5a2a89a3383384d452a21b9e63b05a464f66;hpb=e20075ba805d744d7cc4976e2b8d5e5840fb0a8d;p=jalview.git diff --git a/src/jalview/io/SimpleBlastFile.java b/src/jalview/io/SimpleBlastFile.java index f4dc5a2..1b72545 100644 --- a/src/jalview/io/SimpleBlastFile.java +++ b/src/jalview/io/SimpleBlastFile.java @@ -51,9 +51,10 @@ public class SimpleBlastFile extends AlignFile { } - public SimpleBlastFile(String inFile, String type) throws IOException + public SimpleBlastFile(String inFile, DataSourceType sourceType) + throws IOException { - super(inFile, type); + super(inFile, sourceType); } public SimpleBlastFile(FileParse source) throws IOException @@ -61,6 +62,7 @@ public class SimpleBlastFile extends AlignFile super(source); } + @Override public void initData() { super.initData(); @@ -69,6 +71,7 @@ public class SimpleBlastFile extends AlignFile seqids = new Vector(); } + @Override public void parse() throws IOException { String line; @@ -286,13 +289,9 @@ public class SimpleBlastFile extends AlignFile } } - public String print(SequenceI[] s) + @Override + public String print(SequenceI[] sqs, boolean jvsuffix) { return new String("Not Implemented."); } - - public String print() - { - return print(getSeqsAsArray()); - } }