X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FStockholmFile.java;fp=src%2Fjalview%2Fio%2FStockholmFile.java;h=b9f127422970240e15a05b4cf0325aa776826226;hb=d284df057dccb23cccc3609532406b876c3e2e2f;hp=c3b0a69dd0daf3864722a572c6a76055fd2a25b7;hpb=31bbef5af00068ef84bf56f8b8d1d7a29da84bd3;p=jalview.git

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index c3b0a69..b9f1274 100644
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -529,6 +529,9 @@ public class StockholmFile extends AlignFile
               treeName = an.stringMatched(2);
               treeString = new StringBuffer();
             }
+            // TODO: JAL-3532 - this is where GF comments and database references are lost
+            // suggest overriding this method for Stockholm files to catch and properly
+            // process CC, DR etc into multivalued properties
             setAlignmentProperty(an.stringMatched(1), an.stringMatched(2));
           }
         }