X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FStockholmFile.java;fp=src%2Fjalview%2Fio%2FStockholmFile.java;h=eeadcbf60401a71b499e915b6216f9c329a77ede;hb=49ff0aa506eb0b2e031fa3e8d16337e0c8cf2508;hp=a3f75316676f9b7d21547a6f6b5a4c22d73ff344;hpb=195cc12bf3e78c312b9d7fbfb3aa86b4659684b7;p=jalview.git

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index a3f7531..eeadcbf 100644
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -1048,9 +1048,18 @@ public class StockholmFile extends AlignFile
       }
     }
 
-    // output annotations
+    // output description and annotations
+
     while (i < slen && (seq = s[i]) != null)
     {
+      if (seq.getDescription()!=null)
+      {
+        // out.append("#=GR ");
+        out.append(new Format("%-" + maxid + "s").form(
+                "#=GS " + printId(seq, jvSuffix) + " DE " + seq.getDescription()));
+        out.append(newline);
+      }
+
       AlignmentAnnotation[] alAnot = seq.getAnnotation();
       if (alAnot != null)
       {