X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FStockholmFile.java;h=d5f3cc2d70a188d9c18c9826a225019304085afc;hb=3a993bbe274824870c78bd7695c42fa93908cb30;hp=945b8c5d0757849722257d0ce8c3b0e0b5feafea;hpb=bd185b319f82cc87f4b6866596675ff8fb600cfa;p=jalview.git

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index 945b8c5..d5f3cc2 100644
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -53,7 +53,10 @@ public class StockholmFile extends AlignFile
   {
     super(inFile, type);
   }
-
+  public StockholmFile(FileParse source) throws IOException
+  {
+    super(source);
+  }
   public void initData()
   {
     super.initData();
@@ -221,6 +224,7 @@ public class StockholmFile extends AlignFile
           // + ": " + seq);
           this.seqs.addElement(seqO);
         }
+        return; // finished parsing this segment of source
       }
       else if (!r.search(line))
       {