X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fgff%2FInterProScanHelper.java;fp=src%2Fjalview%2Fio%2Fgff%2FInterProScanHelper.java;h=948cdd2d4065eb5555a22b50164f25f613e46555;hb=be762d8d9c71a7aa3121e845c45911c7192b7827;hp=0aa3b74cb2376333ff75f8094f6c5ad91b1c7c34;hpb=d1bb7a31fc091606aedbc255a5766ac79e36fa91;p=jalview.git diff --git a/src/jalview/io/gff/InterProScanHelper.java b/src/jalview/io/gff/InterProScanHelper.java index 0aa3b74..948cdd2 100644 --- a/src/jalview/io/gff/InterProScanHelper.java +++ b/src/jalview/io/gff/InterProScanHelper.java @@ -111,8 +111,8 @@ public class InterProScanHelper extends Gff3Helper SequenceOntologyI so = SequenceOntologyFactory.getInstance(); String type = columns[TYPE_COL]; if (so.isA(type, SequenceOntologyI.PROTEIN_MATCH) - || (".".equals(columns[SOURCE_COL]) && so.isA(type, - SequenceOntologyI.POLYPEPTIDE))) + || (".".equals(columns[SOURCE_COL]) + && so.isA(type, SequenceOntologyI.POLYPEPTIDE))) { return true; } @@ -124,7 +124,8 @@ public class InterProScanHelper extends Gff3Helper * GFF field 'ID' rather than the usual 'Target' :-O */ @Override - protected String findTargetId(String target, Map> set) + protected String findTargetId(String target, + Map> set) { List ids = set.get(ID); if (ids == null || ids.size() != 1)