X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fpacked%2FJalviewDataset.java;fp=src%2Fjalview%2Fio%2Fpacked%2FJalviewDataset.java;h=d4047d109bdf0eae55e83038412b5170c650de00;hb=ca9ab48d85c35112da4d9bf6273a41e734d0872b;hp=9f84c16235cf5d79116a61501dc6c2e3c50406aa;hpb=5d28c907a598716ca90eaa8a625420e2c0c694f0;p=jalview.git diff --git a/src/jalview/io/packed/JalviewDataset.java b/src/jalview/io/packed/JalviewDataset.java index 9f84c16..d4047d1 100644 --- a/src/jalview/io/packed/JalviewDataset.java +++ b/src/jalview/io/packed/JalviewDataset.java @@ -20,6 +20,7 @@ */ package jalview.io.packed; +import jalview.analysis.SeqsetUtils.SequenceInfo; import jalview.analysis.TreeModel; import jalview.api.FeatureColourI; import jalview.datamodel.AlignmentI; @@ -76,7 +77,7 @@ public class JalviewDataset /** * @return the seqDetails */ - public Hashtable getSeqDetails() + public Map getSeqDetails() { return seqDetails; } @@ -193,7 +194,7 @@ public class JalviewDataset /** * original identity of each sequence in results */ - Hashtable seqDetails; + Map seqDetails; public boolean relaxedIdMatching = false; @@ -211,7 +212,7 @@ public class JalviewDataset * @param parentAlignment */ public JalviewDataset(AlignmentI aldataset, - Map fc, Hashtable seqDets) + Map fc, Map seqDets) { // TODO not used - remove? this(aldataset, fc, seqDets, null); @@ -233,7 +234,7 @@ public class JalviewDataset * with. */ public JalviewDataset(AlignmentI aldataset, - Map fc, Hashtable seqDets, + Map fc, Map seqDets, AlignmentI parentAlignment) { this();