X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FDatastoreItem.java;fp=src%2Fjalview%2Fio%2Fvamsas%2FDatastoreItem.java;h=ed262c547e17017dea8723d9a4a460d25864bbb4;hb=15d1b4064456f85f3ed602440b10184057460a72;hp=6bfddb7b046dee6ab63f577cfdaef711f01fd978;hpb=a2214909ebf9788ca5c6386f1f1675efe3d02b9b;p=jalview.git diff --git a/src/jalview/io/vamsas/DatastoreItem.java b/src/jalview/io/vamsas/DatastoreItem.java index 6bfddb7..ed262c5 100644 --- a/src/jalview/io/vamsas/DatastoreItem.java +++ b/src/jalview/io/vamsas/DatastoreItem.java @@ -25,7 +25,7 @@ import java.util.Hashtable; import java.util.IdentityHashMap; import java.util.Vector; -import jalview.bin.Cache; +import jalview.bin.Console; import jalview.io.VamsasAppDatastore; import jalview.log.JLoggerLog4j; import jalview.util.MessageManager; @@ -74,9 +74,9 @@ public abstract class DatastoreItem { return cdoc.getObject((VorbaId) jv2vobj.get(jvobj)); } - if (Cache.isDebugEnabled()) + if (Console.isDebugEnabled()) { - Cache.debug( + Console.debug( "Returning null VorbaID binding for jalview object " + jvobj); } return null; @@ -95,7 +95,7 @@ public abstract class DatastoreItem if (id == null) { id = cdoc.registerObject(vobj); - Cache.debug( + Console.debug( "Registering new object and returning null for getvObj2jv"); return null; } @@ -122,7 +122,7 @@ public abstract class DatastoreItem if (id == null || vobj.getVorbaId() == null || cdoc.getObject(id) != vobj) { - Cache.error("Failed to get id for " + Console.error("Failed to get id for " + (vobj.isRegisterable() ? "registerable" : "unregisterable") + " object " + vobj); @@ -131,7 +131,7 @@ public abstract class DatastoreItem if (vobj2jv.containsKey(vobj.getVorbaId()) && !(vobj2jv.get(vobj.getVorbaId())).equals(jvobj)) { - Cache.debug( + Console.debug( "Warning? Overwriting existing vamsas id binding for " + vobj.getVorbaId(), new Exception(MessageManager.getString( @@ -140,7 +140,7 @@ public abstract class DatastoreItem else if (jv2vobj.containsKey(jvobj) && !((VorbaId) jv2vobj.get(jvobj)).equals(vobj.getVorbaId())) { - Cache.debug( + Console.debug( "Warning? Overwriting existing jalview object binding for " + jvobj, new Exception(MessageManager.getString( @@ -153,7 +153,7 @@ public abstract class DatastoreItem * bindjvvobj")); } */ // we just update the hash's regardless! - Cache.debug("Binding " + vobj.getVorbaId() + " to " + jvobj); + Console.debug("Binding " + vobj.getVorbaId() + " to " + jvobj); vobj2jv.put(vobj.getVorbaId(), jvobj); // JBPNote - better implementing a hybrid invertible hash. jv2vobj.put(jvobj, vobj.getVorbaId()); @@ -171,7 +171,7 @@ public abstract class DatastoreItem { if (this.jvobj != null && this.vobj != null) { - Cache.debug("updating dsobj registry. (" + this.getClass().getName() + Console.debug("updating dsobj registry. (" + this.getClass().getName() + ")"); } this.jvobj = jvobj;