X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FDbref.java;h=d4aafe82b1b1d3593924de1867a6263baae26056;hb=ad20cd92225f2ee8c251d39b00b90555d382a616;hp=061afaf47e3a3017111240e381106276cf14a22a;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git

diff --git a/src/jalview/io/vamsas/Dbref.java b/src/jalview/io/vamsas/Dbref.java
index 061afaf..d4aafe8 100644
--- a/src/jalview/io/vamsas/Dbref.java
+++ b/src/jalview/io/vamsas/Dbref.java
@@ -1,13 +1,13 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
+ * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
@@ -23,7 +23,6 @@ import uk.ac.vamsas.objects.core.DataSet;
 import uk.ac.vamsas.objects.core.DbRef;
 import uk.ac.vamsas.objects.core.Map;
 import uk.ac.vamsas.objects.core.Sequence;
-import uk.ac.vamsas.objects.core.SequenceType;
 import jalview.io.VamsasAppDatastore;
 
 public class Dbref extends Rangetype
@@ -103,8 +102,7 @@ public class Dbref extends Rangetype
    */
   private void updateMapTo(jalview.datamodel.Mapping mp)
   {
-    log
-            .info("Performing updateMapTo remove this message when we know what we're doing.");
+    log.info("Performing updateMapTo remove this message when we know what we're doing.");
     // TODO determine how sequences associated with database mappings are stored
     // in the document
     if (mp != null && mp.getTo() != null)
@@ -127,7 +125,7 @@ public class Dbref extends Rangetype
                                   : uk.ac.vamsas.objects.utils.SymbolDictionary.STANDARD_AA),
                   ds);
         }
-        // 
+        //
         // TODO: NOW add a mapping between new dataset sequence and sequence
         // associated with the database reference