X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FSequencefeature.java;fp=src%2Fjalview%2Fio%2Fvamsas%2FSequencefeature.java;h=a48f8c8d7f7ff27341d59730f995a77baa245149;hb=a1984b1c8c273ed33c7ce9283039f4027dcae2de;hp=f8d86d55fef62123725f3d29cb75c9f36439dbaa;hpb=c4e814d2930b175c789c2a004801b7b8a1dacd32;p=jalview.git

diff --git a/src/jalview/io/vamsas/Sequencefeature.java b/src/jalview/io/vamsas/Sequencefeature.java
index f8d86d5..a48f8c8 100644
--- a/src/jalview/io/vamsas/Sequencefeature.java
+++ b/src/jalview/io/vamsas/Sequencefeature.java
@@ -97,7 +97,7 @@ public class Sequencefeature extends Rangetype
     DataSetAnnotations dsa = (DataSetAnnotations) vobj;
     if (dsa.getSeqRefCount() != 1)
     {
-      Cache.log.warn("Not binding " + dsa.getVorbaId()
+      Cache.warn("Not binding " + dsa.getVorbaId()
               + " to Sequence Feature - has multiple dataset sequence references.");
       return;
     }
@@ -128,7 +128,7 @@ public class Sequencefeature extends Rangetype
     if (dsa.getSeqRefCount() != 1)
     {
       replaceJvObjMapping(feature, null);
-      Cache.log.warn(
+      Cache.warn(
               "Binding of annotation to jalview feature has changed. Removing binding and recreating.");
       doSync(); // re-verify bindings.
     }
@@ -139,8 +139,7 @@ public class Sequencefeature extends Rangetype
       getDSAnnotationFromJalview(dsa, feature);
       if (oldref != dsa.hashCode())
       {
-        Cache.log
-                .debug("Updated dataset sequence annotation from feature.");
+        Cache.debug("Updated dataset sequence annotation from feature.");
         addProvenance(dsa.getProvenance(), "modified");
       }
     }
@@ -156,7 +155,7 @@ public class Sequencefeature extends Rangetype
     {
       // conflicting update from document - we cannot map this feature anymore.
       replaceJvObjMapping(feature, null);
-      Cache.log.warn("annotation (" + dsa.getVorbaId()
+      Cache.warn("annotation (" + dsa.getVorbaId()
               + " bound to jalview feature cannot be mapped. Removing binding, deleting feature, and deleting feature.");
       // - consider deleting the feature ?
       dsSeq.deleteFeature(feature);
@@ -198,7 +197,7 @@ public class Sequencefeature extends Rangetype
     vSeg.setInclusive(true);
     if (dsa.getSegCount() > 1)
     {
-      Cache.log.debug(
+      Cache.debug(
               "About to destroy complex annotation in vamsas document mapped to sequence feature ("
                       + dsa.getVorbaId() + ")");
     }