X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FSequencemapping.java;fp=src%2Fjalview%2Fio%2Fvamsas%2FSequencemapping.java;h=a33390fc5a0ea29848141ddaa51a7f5e935eef2a;hb=9c98d4bd666346f6ad3892c5394b7da3be82d93e;hp=5a172fe93003b6d100f58c0d38d0d8dcb4a80365;hpb=c7b2143c9cf7c5e05ad63251f7d3910751b16d20;p=jalview.git

diff --git a/src/jalview/io/vamsas/Sequencemapping.java b/src/jalview/io/vamsas/Sequencemapping.java
index 5a172fe..a33390f 100644
--- a/src/jalview/io/vamsas/Sequencemapping.java
+++ b/src/jalview/io/vamsas/Sequencemapping.java
@@ -244,8 +244,7 @@ public class Sequencemapping extends Rangetype
   private void update(jalview.datamodel.Mapping mjvmapping,
           SequenceMapping sequenceMapping)
   {
-    Console.error(
-            "Not implemented: Jalview Update Sequence DBRef Mapping");
+    Console.error("Not implemented: Jalview Update Sequence DBRef Mapping");
   }
 
   /**
@@ -390,28 +389,28 @@ public class Sequencemapping extends Rangetype
     {
       if (Console.isDebugEnabled())
       {
-        Console.debug("Not matching conjugate refs for "
-                + from.getName() + " and " + to.getName());
+        Console.debug("Not matching conjugate refs for " + from.getName()
+                + " and " + to.getName());
       }
       return;
     }
     if (Console.isDebugEnabled())
     {
-      Console.debug("Matching conjugate refs for "
-              + from.getName() + " and " + to.getName());
+      Console.debug("Matching conjugate refs for " + from.getName()
+              + " and " + to.getName());
     }
     List<DBRefEntry> fdb = from.getDBRefs();
     List<DBRefEntry> tdb = new ArrayList<DBRefEntry>(to.getDBRefs());
     int tdblen = to.getDBRefs().size();
-//    
-//    
-//    YOWSER
-//    
-//    System.arraycopy(to.getDBRefs(), 0, tdb, 0, tdblen);
-//    
-//    
-//    
-//    
+    //
+    //
+    // YOWSER
+    //
+    // System.arraycopy(to.getDBRefs(), 0, tdb, 0, tdblen);
+    //
+    //
+    //
+    //
     Vector matched = new Vector();
     jalview.util.MapList smapI = smap.getInverse();
     for (int f = 0, fn = fdb.size(); f < fn; f++)