X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FSequencemapping.java;fp=src%2Fjalview%2Fio%2Fvamsas%2FSequencemapping.java;h=a33390fc5a0ea29848141ddaa51a7f5e935eef2a;hb=9c98d4bd666346f6ad3892c5394b7da3be82d93e;hp=5a172fe93003b6d100f58c0d38d0d8dcb4a80365;hpb=c7b2143c9cf7c5e05ad63251f7d3910751b16d20;p=jalview.git diff --git a/src/jalview/io/vamsas/Sequencemapping.java b/src/jalview/io/vamsas/Sequencemapping.java index 5a172fe..a33390f 100644 --- a/src/jalview/io/vamsas/Sequencemapping.java +++ b/src/jalview/io/vamsas/Sequencemapping.java @@ -244,8 +244,7 @@ public class Sequencemapping extends Rangetype private void update(jalview.datamodel.Mapping mjvmapping, SequenceMapping sequenceMapping) { - Console.error( - "Not implemented: Jalview Update Sequence DBRef Mapping"); + Console.error("Not implemented: Jalview Update Sequence DBRef Mapping"); } /** @@ -390,28 +389,28 @@ public class Sequencemapping extends Rangetype { if (Console.isDebugEnabled()) { - Console.debug("Not matching conjugate refs for " - + from.getName() + " and " + to.getName()); + Console.debug("Not matching conjugate refs for " + from.getName() + + " and " + to.getName()); } return; } if (Console.isDebugEnabled()) { - Console.debug("Matching conjugate refs for " - + from.getName() + " and " + to.getName()); + Console.debug("Matching conjugate refs for " + from.getName() + + " and " + to.getName()); } List fdb = from.getDBRefs(); List tdb = new ArrayList(to.getDBRefs()); int tdblen = to.getDBRefs().size(); -// -// -// YOWSER -// -// System.arraycopy(to.getDBRefs(), 0, tdb, 0, tdblen); -// -// -// -// + // + // + // YOWSER + // + // System.arraycopy(to.getDBRefs(), 0, tdb, 0, tdblen); + // + // + // + // Vector matched = new Vector(); jalview.util.MapList smapI = smap.getInverse(); for (int f = 0, fn = fdb.size(); f < fn; f++)