X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FTree.java;fp=src%2Fjalview%2Fio%2Fvamsas%2FTree.java;h=f676347e5b56e49f86c69618dfb271f6159aaa06;hb=050133c52e350a0e76b94ab0c1243aea7613b042;hp=f784fb031ebc017ee3987be0a9938af0bcbbe0c5;hpb=9a20339fe0483d2757c6c6b11b60e7332f828811;p=jalview.git diff --git a/src/jalview/io/vamsas/Tree.java b/src/jalview/io/vamsas/Tree.java index f784fb0..f676347 100644 --- a/src/jalview/io/vamsas/Tree.java +++ b/src/jalview/io/vamsas/Tree.java @@ -20,7 +20,7 @@ */ package jalview.io.vamsas; -import jalview.analysis.NJTree; +import jalview.analysis.TreeBuilder; import jalview.analysis.TreeModel; import jalview.bin.Cache; import jalview.datamodel.AlignmentI; @@ -240,7 +240,8 @@ public class Tree extends DatastoreItem prov.getEntry(0).addParam(new Param()); prov.getEntry(0).getParam(0).setName("treeType"); prov.getEntry(0).getParam(0).setType("utf8"); - prov.getEntry(0).getParam(0).setContent(NJTree.NEIGHBOUR_JOINING); + prov.getEntry(0).getParam(0) + .setContent(TreeBuilder.NEIGHBOUR_JOINING); // TODO: type of tree is a general parameter int ranges[] = tp.getTree().seqData.getVisibleContigs(); // VisibleContigs are with respect to alignment coordinates. Still need