X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvamsas%2FTree.java;h=00e4fbc97ce7334c5258f018a01e001af3a74103;hb=4f77328104498504339216829abf5ea87e2791ec;hp=e4e0b6c76ae77b8f6856d78fb4e8b6d6e41c15bf;hpb=2b8c0785318a3528e1876e8e2dd48b7d831eae69;p=jalview.git

diff --git a/src/jalview/io/vamsas/Tree.java b/src/jalview/io/vamsas/Tree.java
index e4e0b6c..00e4fbc 100644
--- a/src/jalview/io/vamsas/Tree.java
+++ b/src/jalview/io/vamsas/Tree.java
@@ -443,7 +443,7 @@ public class Tree extends DatastoreItem
     Integer nindx = (Integer) nodespecs.get(nname);
     if (nindx == null)
     {
-      nindx = new Integer(1);
+      nindx = Integer.valueOf(1);
     }
     nname = nindx.toString() + " " + nname;
     return nname;
@@ -465,7 +465,7 @@ public class Tree extends DatastoreItem
     String oval = nodespec.substring(0, nodespec.indexOf(' '));
     try
     {
-      occurence = new Integer(oval).intValue();
+      occurence = Integer.valueOf(oval).intValue();
     } catch (Exception e)
     {
       System.err.println("Invalid nodespec '" + nodespec + "'");
@@ -517,7 +517,7 @@ public class Tree extends DatastoreItem
    * referenced in input data has already been associated with jalview objects.
    * 
    * @param tp
-   * @param loaderFrame
+   * @param alignFrame
    * @return Object[] { AlignmentView, AlignmentI - reference alignment for
    *         input }
    */