X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2Fvcf%2FVCFLoader.java;fp=src%2Fjalview%2Fio%2Fvcf%2FVCFLoader.java;h=7bf7791f2b5d98a916313b804098aa3d088e10e0;hb=6a05eb3f55d97e685f0c723822384633d5636778;hp=622da73dcf2552da32d3eb91fa9af8691852bea0;hpb=d113749a183a3ea8f3f7e22c725511f59f1d833f;p=jalview.git

diff --git a/src/jalview/io/vcf/VCFLoader.java b/src/jalview/io/vcf/VCFLoader.java
index 622da73..7bf7791 100644
--- a/src/jalview/io/vcf/VCFLoader.java
+++ b/src/jalview/io/vcf/VCFLoader.java
@@ -737,7 +737,7 @@ public class VCFLoader
     String species = seqCoords.getSpeciesId();
     String chromosome = seqCoords.getChromosomeId();
     String seqRef = seqCoords.getAssemblyId();
-    MapList map = seqCoords.getMap();
+    MapList map = seqCoords.getMapping();
 
     // note this requires the configured species to match that
     // returned with the Ensembl sequence; todo: support aliases?