X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGAlignFrame.java;fp=src%2Fjalview%2Fjbgui%2FGAlignFrame.java;h=ffa586e68eb0ff25ed85364274509fc9f579da2d;hb=e9b0f1619b7b33b9d2ebb3f64d7cefe563c24db8;hp=71b6b9e90e07627cd8df368c3adb1e2610b9659b;hpb=7a75c9344b107e95d3f77a89c0dad99b7c222128;p=jalview.git

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index 71b6b9e..ffa586e 100755
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -20,18 +20,6 @@
  */
 package jalview.jbgui;
 
-import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
-import jalview.analysis.GeneticCodeI;
-import jalview.analysis.GeneticCodes;
-import jalview.api.SplitContainerI;
-import jalview.bin.Cache;
-import jalview.gui.JvSwingUtils;
-import jalview.gui.Preferences;
-import jalview.io.FileFormats;
-import jalview.schemes.ResidueColourScheme;
-import jalview.util.MessageManager;
-import jalview.util.Platform;
-
 import java.awt.BorderLayout;
 import java.awt.Color;
 import java.awt.GridLayout;
@@ -61,6 +49,18 @@ import javax.swing.event.ChangeEvent;
 import javax.swing.event.MenuEvent;
 import javax.swing.event.MenuListener;
 
+import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
+import jalview.analysis.GeneticCodeI;
+import jalview.analysis.GeneticCodes;
+import jalview.api.SplitContainerI;
+import jalview.bin.Cache;
+import jalview.gui.JvSwingUtils;
+import jalview.gui.Preferences;
+import jalview.io.FileFormats;
+import jalview.schemes.ResidueColourScheme;
+import jalview.util.MessageManager;
+import jalview.util.Platform;
+
 @SuppressWarnings("serial")
 public class GAlignFrame extends JInternalFrame
 {
@@ -102,6 +102,8 @@ public class GAlignFrame extends JInternalFrame
 
   public JCheckBoxMenuItem showSeqFeatures = new JCheckBoxMenuItem();
 
+  public JCheckBoxMenuItem showSeqFeatureCounts = new JCheckBoxMenuItem();
+
   JMenuItem copy = new JMenuItem();
 
   JMenuItem cut = new JMenuItem();
@@ -803,6 +805,16 @@ public class GAlignFrame extends JInternalFrame
         showSeqFeatures_actionPerformed(actionEvent);
       }
     });
+    showSeqFeatureCounts.setText(
+            MessageManager.getString("label.show_sequence_feature_counts"));
+    showSeqFeatureCounts.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        showSeqFeatureCounts_actionPerformed(actionEvent);
+      }
+    });
     /*
      * showSeqFeaturesHeight.setText("Vary Sequence Feature Height");
      * showSeqFeaturesHeight.addActionListener(new ActionListener() { public
@@ -1863,6 +1875,7 @@ public class GAlignFrame extends JInternalFrame
     autoAnnMenu.add(showAutoFirst);
     autoAnnMenu.add(showAutoLast);
     autoAnnMenu.addSeparator();
+    autoAnnMenu.add(showSeqFeatureCounts);
     autoAnnMenu.add(applyAutoAnnotationSettings);
     autoAnnMenu.add(showConsensusHistogram);
     autoAnnMenu.add(showSequenceLogo);
@@ -1951,6 +1964,13 @@ public class GAlignFrame extends JInternalFrame
     // selectMenu.add(listenToViewSelections);
   }
 
+  protected void showSeqFeatureCounts_actionPerformed(
+          ActionEvent actionEvent)
+  {
+    // TODO Auto-generated method stub
+
+  }
+
   protected void loadVcf_actionPerformed()
   {
   }