X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjson%2Fbinding%2Fbiojson%2Fv1%2FAppSettingsPojo.java;fp=src%2Fjalview%2Fjson%2Fbinding%2Fbiojson%2Fv1%2FAppSettingsPojo.java;h=0000000000000000000000000000000000000000;hb=2d11774110564c33e2e1460beab078095af22a29;hp=33856821581151b52883382ba827971df5224b14;hpb=8f6a276a88da8aa97fd31e1374f1fb9f2eee0918;p=jalview.git

diff --git a/src/jalview/json/binding/biojson/v1/AppSettingsPojo.java b/src/jalview/json/binding/biojson/v1/AppSettingsPojo.java
deleted file mode 100644
index 3385682..0000000
--- a/src/jalview/json/binding/biojson/v1/AppSettingsPojo.java
+++ /dev/null
@@ -1,91 +0,0 @@
-package jalview.json.binding.biojson.v1;
-
-
-public class AppSettingsPojo
-{
-  // private String globalColorScheme = "none";
-
-  
-
-  public AppSettingsPojo()
-  {
-
-  }
-
-  //
-  //
-  // public void setGlobalColorScheme(String globalColorScheme)
-  // {
-  // for (JalviewBioJsColorSchemeMapper cs : JalviewBioJsColorSchemeMapper
-  // .values())
-  // {
-  // if (cs.getJalviewName().equals(globalColorScheme))
-  // {
-  // // this.globalColorScheme = cs.getBioJsName();
-  // this.settings.put("globalColorScheme", cs.getBioJsName());
-  // break;
-  // }
-  // }
-  // }
-  //
-  // public enum JalviewBioJsColorSchemeMapper
-  // {
-  // USER_DEFINED("User Defined", "user defined", null), NONE("None", "foo",
-  // null), CLUSTAL("Clustal", "clustal", null), ZAPPO("Zappo",
-  // "zappo", new ZappoColourScheme()), TAYLOR("Taylor", "taylor",
-  // new TaylorColourScheme()), NUCLEOTIDE("Nucleotide",
-  // "nucleotide", new NucleotideColourScheme()), PURINE_PYRIMIDINE(
-  // "Purine/Pyrimidine", "purine",
-  // new PurinePyrimidineColourScheme()), HELIX_PROPENCITY(
-  // "Helix Propensity", "helix", new HelixColourScheme()), TURN_PROPENSITY(
-  // "Turn Propensity", "turn", new TurnColourScheme()), STRAND_PROPENSITY(
-  // "Strand Propensity", "strand", new StrandColourScheme()), BURIED_INDEX(
-  // "Buried Index", "buried", new BuriedColourScheme()), HYDROPHOBIC(
-  // "Hydrophobic", "hydro", new HydrophobicColourScheme()),
-  //
-  // // The color types below are not yet supported by BioJs MSA viewer
-  // T_COFFE_SCORES("T-Coffee Scores", "T-Coffee Scores", null), RNA_INT_TYPE(
-  // "RNA Interaction type", "RNA Interaction type",
-  // new RNAInteractionColourScheme()), BLOSUM62("Blosum62",
-  // "Blosum62", new Blosum62ColourScheme()), RNA_HELICES(
-  // "RNA Helices", "RNA Helices", null), PERCENTAGE_IDENTITY(
-  // "% Identity", "pid", new PIDColourScheme());
-  //
-  // private String jalviewName;
-  //
-  // private String bioJsName;
-  //
-  // private ColourSchemeI jvColourScheme;
-  //
-  // private JalviewBioJsColorSchemeMapper(String jalviewName,
-  // String bioJsName, ColourSchemeI jvColourScheme)
-  // {
-  // this.jalviewName = jalviewName;
-  // this.bioJsName = bioJsName;
-  // this.setJvColourScheme(jvColourScheme);
-  // }
-  //
-  // public String getJalviewName()
-  // {
-  // return jalviewName;
-  // }
-  //
-  // public String getBioJsName()
-  // {
-  // return bioJsName;
-  // }
-  //
-  // public ColourSchemeI getJvColourScheme()
-  // {
-  // return jvColourScheme;
-  // }
-  //
-  // public void setJvColourScheme(ColourSchemeI jvColourScheme)
-  // {
-  // this.jvColourScheme = jvColourScheme;
-  // }
-  //
-  // }
-
-
-}