X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fmath%2FMatrixI.java;fp=src%2Fjalview%2Fmath%2FMatrixI.java;h=d72890a040145f88bfcc9818a88c8789e1c30937;hb=ac5f0c912a1c7819530456bab13942ad3734460b;hp=5b93c76ca121ea3a9e57a02ffdfe37a2cd6376af;hpb=8488bc9805734461d015552f1447a607412fc550;p=jalview.git

diff --git a/src/jalview/math/MatrixI.java b/src/jalview/math/MatrixI.java
index 5b93c76..d72890a 100644
--- a/src/jalview/math/MatrixI.java
+++ b/src/jalview/math/MatrixI.java
@@ -22,6 +22,10 @@ package jalview.math;
 
 import java.io.PrintStream;
 
+/**
+ * An interface that describes a rectangular matrix of double values and
+ * operations on it
+ */
 public interface MatrixI
 {
   /**
@@ -63,18 +67,59 @@ public interface MatrixI
    */
   double[] getRow(int i);
 
+  /**
+   * Answers a new matrix with a copy of the values in this one
+   * 
+   * @return
+   */
   MatrixI copy();
 
+  /**
+   * Returns a new matrix which is the transpose of this one
+   * 
+   * @return
+   */
   MatrixI transpose();
 
+  /**
+   * Returns a new matrix which is the result of premultiplying this matrix by
+   * the supplied argument. If this of size AxB (A rows and B columns), and the
+   * argument is CxA (C rows and A columns), the result is of size CxB.
+   * 
+   * @param in
+   * 
+   * @return
+   * @throws IllegalArgumentException
+   *           if the number of columns in the pre-multiplier is not equal to
+   *           the number of rows in the multiplicand (this)
+   */
   MatrixI preMultiply(MatrixI m);
 
+  /**
+   * Returns a new matrix which is the result of postmultiplying this matrix by
+   * the supplied argument. If this of size AxB (A rows and B columns), and the
+   * argument is BxC (B rows and C columns), the result is of size AxC.
+   * <p>
+   * This method simply returns the result of in.preMultiply(this)
+   * 
+   * @param in
+   * 
+   * @return
+   * @throws IllegalArgumentException
+   *           if the number of rows in the post-multiplier is not equal to the
+   *           number of columns in the multiplicand (this)
+   * @see #preMultiply(Matrix)
+   */
   MatrixI postMultiply(MatrixI m);
 
   double[] getD();
 
   double[] getE();
 
+  void setD(double[] v);
+
+  void setE(double[] v);
+
   void print(PrintStream ps, String format);
 
   void printD(PrintStream ps, String format);