X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FAlcodMap.java;fp=src%2Fjalview%2Fschemabinding%2Fversion2%2FAlcodMap.java;h=61866aa13eca134d8a80ddb439305f494f751b3b;hb=cb7c4a276c52b0bb3e448e6761886fecc0e9d05c;hp=90b969702252dc84b10f86766e8a5a51b0dcc01f;hpb=a394f0df3650d5b1e0b76e0319b650fe8ac98e41;p=jalview.git diff --git a/src/jalview/schemabinding/version2/AlcodMap.java b/src/jalview/schemabinding/version2/AlcodMap.java index 90b9697..61866aa 100644 --- a/src/jalview/schemabinding/version2/AlcodMap.java +++ b/src/jalview/schemabinding/version2/AlcodMap.java @@ -1,27 +1,14 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) - * Copyright (C) $$Year-Rel$$ The Jalview Authors - * - * This file is part of Jalview. - * - * Jalview is free software: you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 - * of the License, or (at your option) any later version. - * - * Jalview is distributed in the hope that it will be useful, but - * WITHOUT ANY WARRANTY; without even the implied warranty - * of MERCHANTABILITY or FITNESS FOR A PARTICULAR - * PURPOSE. See the GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with Jalview. If not, see . - * The Jalview Authors are detailed in the 'AUTHORS' file. + * This class was automatically generated with + * Castor 1.1, using an XML + * Schema. + * $Id$ */ + package jalview.schemabinding.version2; -//---------------------------------/ -//- Imported classes and packages -/ + //---------------------------------/ + //- Imported classes and packages -/ //---------------------------------/ import org.exolab.castor.xml.Marshaller; @@ -32,174 +19,166 @@ import org.exolab.castor.xml.Unmarshaller; * * @version $Revision$ $Date$ */ -public class AlcodMap implements java.io.Serializable -{ - - // --------------------------/ - // - Class/Member Variables -/ - // --------------------------/ - - /** - * internal jalview id for the dnasq for this mapping. - * - */ - private java.lang.String _dnasq; - - /** - * a Mapping entry and an associated protein sequence - * - */ - private jalview.schemabinding.version2.Mapping _mapping; - - // ----------------/ - // - Constructors -/ - // ----------------/ - - public AlcodMap() - { - super(); - } - - // -----------/ - // - Methods -/ - // -----------/ - - /** - * Returns the value of field 'dnasq'. The field 'dnasq' has the following - * description: internal jalview id for the dnasq for this mapping. - * - * - * @return the value of field 'Dnasq'. - */ - public java.lang.String getDnasq() - { - return this._dnasq; - } - - /** - * Returns the value of field 'mapping'. The field 'mapping' has the following - * description: a Mapping entry and an associated protein sequence - * - * - * @return the value of field 'Mapping'. - */ - public jalview.schemabinding.version2.Mapping getMapping() - { - return this._mapping; - } - - /** - * Method isValid. - * - * @return true if this object is valid according to the schema - */ - public boolean isValid() - { - try - { - validate(); - } catch (org.exolab.castor.xml.ValidationException vex) - { - return false; +public class AlcodMap implements java.io.Serializable { + + + //--------------------------/ + //- Class/Member Variables -/ + //--------------------------/ + + /** + * internal jalview id for the dnasq for this mapping. + * + */ + private java.lang.String _dnasq; + + /** + * a Mapping entry and an associated protein sequence + * + */ + private jalview.schemabinding.version2.Mapping _mapping; + + + //----------------/ + //- Constructors -/ + //----------------/ + + public AlcodMap() { + super(); + } + + + //-----------/ + //- Methods -/ + //-----------/ + + /** + * Returns the value of field 'dnasq'. The field 'dnasq' has + * the following description: internal jalview id for the dnasq + * for this mapping. + * + * + * @return the value of field 'Dnasq'. + */ + public java.lang.String getDnasq( + ) { + return this._dnasq; + } + + /** + * Returns the value of field 'mapping'. The field 'mapping' + * has the following description: a Mapping entry and an + * associated protein sequence + * + * + * @return the value of field 'Mapping'. + */ + public jalview.schemabinding.version2.Mapping getMapping( + ) { + return this._mapping; + } + + /** + * Method isValid. + * + * @return true if this object is valid according to the schema + */ + public boolean isValid( + ) { + try { + validate(); + } catch (org.exolab.castor.xml.ValidationException vex) { + return false; + } + return true; + } + + /** + * + * + * @param out + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + */ + public void marshal( + final java.io.Writer out) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + Marshaller.marshal(this, out); + } + + /** + * + * + * @param handler + * @throws java.io.IOException if an IOException occurs during + * marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + */ + public void marshal( + final org.xml.sax.ContentHandler handler) + throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + Marshaller.marshal(this, handler); + } + + /** + * Sets the value of field 'dnasq'. The field 'dnasq' has the + * following description: internal jalview id for the dnasq for + * this mapping. + * + * + * @param dnasq the value of field 'dnasq'. + */ + public void setDnasq( + final java.lang.String dnasq) { + this._dnasq = dnasq; + } + + /** + * Sets the value of field 'mapping'. The field 'mapping' has + * the following description: a Mapping entry and an associated + * protein sequence + * + * + * @param mapping the value of field 'mapping'. + */ + public void setMapping( + final jalview.schemabinding.version2.Mapping mapping) { + this._mapping = mapping; + } + + /** + * Method unmarshal. + * + * @param reader + * @throws org.exolab.castor.xml.MarshalException if object is + * null or if any SAXException is thrown during marshaling + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + * @return the unmarshaled + * jalview.schemabinding.version2.AlcodMap + */ + public static jalview.schemabinding.version2.AlcodMap unmarshal( + final java.io.Reader reader) + throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException { + return (jalview.schemabinding.version2.AlcodMap) Unmarshaller.unmarshal(jalview.schemabinding.version2.AlcodMap.class, reader); + } + + /** + * + * + * @throws org.exolab.castor.xml.ValidationException if this + * object is an invalid instance according to the schema + */ + public void validate( + ) + throws org.exolab.castor.xml.ValidationException { + org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); + validator.validate(this); } - return true; - } - - /** - * - * - * @param out - * @throws org.exolab.castor.xml.MarshalException - * if object is null or if any SAXException is thrown during - * marshaling - * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the schema - */ - public void marshal(final java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException - { - Marshaller.marshal(this, out); - } - - /** - * - * - * @param handler - * @throws java.io.IOException - * if an IOException occurs during marshaling - * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the schema - * @throws org.exolab.castor.xml.MarshalException - * if object is null or if any SAXException is thrown during - * marshaling - */ - public void marshal(final org.xml.sax.ContentHandler handler) - throws java.io.IOException, - org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException - { - Marshaller.marshal(this, handler); - } - - /** - * Sets the value of field 'dnasq'. The field 'dnasq' has the following - * description: internal jalview id for the dnasq for this mapping. - * - * - * @param dnasq - * the value of field 'dnasq'. - */ - public void setDnasq(final java.lang.String dnasq) - { - this._dnasq = dnasq; - } - - /** - * Sets the value of field 'mapping'. The field 'mapping' has the following - * description: a Mapping entry and an associated protein sequence - * - * - * @param mapping - * the value of field 'mapping'. - */ - public void setMapping( - final jalview.schemabinding.version2.Mapping mapping) - { - this._mapping = mapping; - } - - /** - * Method unmarshal. - * - * @param reader - * @throws org.exolab.castor.xml.MarshalException - * if object is null or if any SAXException is thrown during - * marshaling - * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the schema - * @return the unmarshaled jalview.schemabinding.version2.AlcodMap - */ - public static jalview.schemabinding.version2.AlcodMap unmarshal( - final java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException - { - return (jalview.schemabinding.version2.AlcodMap) Unmarshaller - .unmarshal(jalview.schemabinding.version2.AlcodMap.class, - reader); - } - - /** - * - * - * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the schema - */ - public void validate() throws org.exolab.castor.xml.ValidationException - { - org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); - validator.validate(this); - } }