X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FAlignment.java;fp=src%2Fjalview%2Fschemabinding%2Fversion2%2FAlignment.java;h=3b9d53b6befbff0449520611f5c656ae603dc670;hb=0f71bfca98457c30f1051f142c31b6aaa3e23ead;hp=0000000000000000000000000000000000000000;hpb=072fc418c393cbd2a40dfa1d3e46f90178b79572;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/Alignment.java b/src/jalview/schemabinding/version2/Alignment.java
new file mode 100755
index 0000000..3b9d53b
--- /dev/null
+++ b/src/jalview/schemabinding/version2/Alignment.java
@@ -0,0 +1,173 @@
+/*
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+  //---------------------------------/
+ //- Imported classes and packages -/
+//---------------------------------/
+
+import java.io.IOException;
+import java.io.Reader;
+import java.io.Serializable;
+import java.io.Writer;
+import org.exolab.castor.xml.MarshalException;
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+import org.exolab.castor.xml.ValidationException;
+import org.xml.sax.ContentHandler;
+
+/**
+ * Class Alignment.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class Alignment implements java.io.Serializable {
+
+
+      //--------------------------/
+     //- Class/Member Variables -/
+    //--------------------------/
+
+    /**
+     * Field _annotation
+     */
+    private jalview.schemabinding.version2.Annotation _annotation;
+
+    /**
+     * Field _sequenceSet
+     */
+    private jalview.schemabinding.version2.SequenceSet _sequenceSet;
+
+
+      //----------------/
+     //- Constructors -/
+    //----------------/
+
+    public Alignment() {
+        super();
+    } //-- jalview.schemabinding.version2.Alignment()
+
+
+      //-----------/
+     //- Methods -/
+    //-----------/
+
+    /**
+     * Returns the value of field 'annotation'.
+     * 
+     * @return Annotation
+     * @return the value of field 'annotation'.
+     */
+    public jalview.schemabinding.version2.Annotation getAnnotation()
+    {
+        return this._annotation;
+    } //-- jalview.schemabinding.version2.Annotation getAnnotation() 
+
+    /**
+     * Returns the value of field 'sequenceSet'.
+     * 
+     * @return SequenceSet
+     * @return the value of field 'sequenceSet'.
+     */
+    public jalview.schemabinding.version2.SequenceSet getSequenceSet()
+    {
+        return this._sequenceSet;
+    } //-- jalview.schemabinding.version2.SequenceSet getSequenceSet() 
+
+    /**
+     * Method isValid
+     * 
+     * 
+     * 
+     * @return boolean
+     */
+    public boolean isValid()
+    {
+        try {
+            validate();
+        }
+        catch (org.exolab.castor.xml.ValidationException vex) {
+            return false;
+        }
+        return true;
+    } //-- boolean isValid() 
+
+    /**
+     * Method marshal
+     * 
+     * 
+     * 
+     * @param out
+     */
+    public void marshal(java.io.Writer out)
+        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+    {
+        
+        Marshaller.marshal(this, out);
+    } //-- void marshal(java.io.Writer) 
+
+    /**
+     * Method marshal
+     * 
+     * 
+     * 
+     * @param handler
+     */
+    public void marshal(org.xml.sax.ContentHandler handler)
+        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+    {
+        
+        Marshaller.marshal(this, handler);
+    } //-- void marshal(org.xml.sax.ContentHandler) 
+
+    /**
+     * Sets the value of field 'annotation'.
+     * 
+     * @param annotation the value of field 'annotation'.
+     */
+    public void setAnnotation(jalview.schemabinding.version2.Annotation annotation)
+    {
+        this._annotation = annotation;
+    } //-- void setAnnotation(jalview.schemabinding.version2.Annotation) 
+
+    /**
+     * Sets the value of field 'sequenceSet'.
+     * 
+     * @param sequenceSet the value of field 'sequenceSet'.
+     */
+    public void setSequenceSet(jalview.schemabinding.version2.SequenceSet sequenceSet)
+    {
+        this._sequenceSet = sequenceSet;
+    } //-- void setSequenceSet(jalview.schemabinding.version2.SequenceSet) 
+
+    /**
+     * Method unmarshal
+     * 
+     * 
+     * 
+     * @param reader
+     * @return Object
+     */
+    public static java.lang.Object unmarshal(java.io.Reader reader)
+        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+    {
+        return (jalview.schemabinding.version2.Alignment) Unmarshaller.unmarshal(jalview.schemabinding.version2.Alignment.class, reader);
+    } //-- java.lang.Object unmarshal(java.io.Reader) 
+
+    /**
+     * Method validate
+     * 
+     */
+    public void validate()
+        throws org.exolab.castor.xml.ValidationException
+    {
+        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+        validator.validate(this);
+    } //-- void validate() 
+
+}