X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FNucleotideAmbiguityColourScheme.java;fp=src%2Fjalview%2Fschemes%2FNucleotideAmbiguityColourScheme.java;h=dd42db35c8f6fa1a49a83a4117be04afa6d2fd1b;hb=4a59f639cf5769d9ec66142ebecfa4961c5d3b04;hp=0000000000000000000000000000000000000000;hpb=a8c998b5e5debd0dc8a17daa8005a1cc3ca07078;p=jalview.git

diff --git a/src/jalview/schemes/NucleotideAmbiguityColourScheme.java b/src/jalview/schemes/NucleotideAmbiguityColourScheme.java
new file mode 100644
index 0000000..dd42db3
--- /dev/null
+++ b/src/jalview/schemes/NucleotideAmbiguityColourScheme.java
@@ -0,0 +1,40 @@
+package jalview.schemes;
+
+import jalview.api.AlignViewportI;
+import jalview.datamodel.AnnotatedCollectionI;
+
+public class NucleotideAmbiguityColourScheme extends ResidueColourScheme
+{
+  /**
+   * Creates a new NucleotideColourScheme object.
+   */
+  public NucleotideAmbiguityColourScheme()
+  {
+    super(ResidueProperties.nucleotideIndex,
+            ResidueProperties.nucleotideAmbiguity);
+  }
+
+  @Override
+  public boolean isNucleotideSpecific()
+  {
+    return true;
+  }
+
+  @Override
+  public String getSchemeName()
+  {
+    return JalviewColourScheme.NucleotideAmbiguity.toString();
+  }
+
+  /**
+   * Returns a new instance of this colour scheme with which the given data may
+   * be coloured
+   */
+  @Override
+  public ColourSchemeI getInstance(AlignViewportI view,
+          AnnotatedCollectionI coll)
+  {
+    return new NucleotideAmbiguityColourScheme();
+  }
+
+}