X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FPIDColourScheme.java;h=eadf09b34544112a7caafb047951585ba9c52866;hb=66b1bf1a6480b320ddaa00d4f5e70b2051041c11;hp=916887ef2ec4ee7f035d5278244712017bdf60ba;hpb=4e2ff24ffc63275ce811eeecb81bd65abb907014;p=jalview.git

diff --git a/src/jalview/schemes/PIDColourScheme.java b/src/jalview/schemes/PIDColourScheme.java
index 916887e..eadf09b 100755
--- a/src/jalview/schemes/PIDColourScheme.java
+++ b/src/jalview/schemes/PIDColourScheme.java
@@ -16,8 +16,13 @@ public class PIDColourScheme extends ResidueColourScheme {
     }
 
 
+
   public Color findColour(String s, int j) {
-      Color     c    = Color.white;
+
+    if( threshold!=0 && !aboveThreshold(s,j))
+      return Color.white;
+
+    Color     c    = Color.white;
       Hashtable hash =  (Hashtable)consensus.elementAt(j);
 
       double sc = 0;