X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FResidueProperties.java;h=0cd4cba405992077f5d8c566b0d31b4355fcf316;hb=ac3d9833fe58e6d40db34203eea222ea3c10c3f0;hp=56faf2a6c5923d4b202dfb8f565dfeec12c37bea;hpb=d5538cea7610ca0658449f0bcdb8a7063c3c90fe;p=jalview.git

diff --git a/src/jalview/schemes/ResidueProperties.java b/src/jalview/schemes/ResidueProperties.java
index 56faf2a..0cd4cba 100755
--- a/src/jalview/schemes/ResidueProperties.java
+++ b/src/jalview/schemes/ResidueProperties.java
@@ -1472,10 +1472,10 @@ public class ResidueProperties
       propMatrixPos[i][i]=maxP;
       propMatrixEpos[i][i]=maxEP;
     }
-    
-    scoreMatrices.put("Conservation Pos", new ScoreMatrix("Conservation Pos",propMatrixPos,0));
-    scoreMatrices.put("Conservation Both", new ScoreMatrix("Conservation Both",propMatrixF,0));
-    scoreMatrices.put("Conservation EnhPos", new ScoreMatrix("Conservation EnhPos",propMatrixEpos,0));
+    // JAL-1512 comment out physicochemical score matrices for 2.8.1 release
+    //scoreMatrices.put("Conservation Pos", new ScoreMatrix("Conservation Pos",propMatrixPos,0));
+    //scoreMatrices.put("Conservation Both", new ScoreMatrix("Conservation Both",propMatrixF,0));
+    //scoreMatrices.put("Conservation EnhPos", new ScoreMatrix("Conservation EnhPos",propMatrixEpos,0));
     scoreMatrices.put("PID", new PIDScoreModel());
   }