X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemes%2FTCoffeeColourScheme.java;fp=src%2Fjalview%2Fschemes%2FTCoffeeColourScheme.java;h=812dca735468c6c0036a23cb7daa8a48e7988529;hb=be762d8d9c71a7aa3121e845c45911c7192b7827;hp=13d1d55951c9218d2328a8954bd9a430572035e1;hpb=d1bb7a31fc091606aedbc255a5766ac79e36fa91;p=jalview.git

diff --git a/src/jalview/schemes/TCoffeeColourScheme.java b/src/jalview/schemes/TCoffeeColourScheme.java
index 13d1d55..812dca7 100644
--- a/src/jalview/schemes/TCoffeeColourScheme.java
+++ b/src/jalview/schemes/TCoffeeColourScheme.java
@@ -87,7 +87,8 @@ public class TCoffeeColourScheme extends ResidueColourScheme
     // Search alignment to get all tcoffee annotation and pick one set of
     // annotation to use to colour seqs.
     seqMap = new IdentityHashMap<SequenceI, Color[]>();
-    AnnotatedCollectionI alcontext = alignment instanceof AlignmentI ? alignment
+    AnnotatedCollectionI alcontext = alignment instanceof AlignmentI
+            ? alignment
             : alignment.getContext();
     if (alcontext == null)
     {
@@ -154,8 +155,8 @@ public class TCoffeeColourScheme extends ResidueColourScheme
   @Override
   public boolean isApplicableTo(AnnotatedCollectionI ac)
   {
-    AnnotatedCollectionI alcontext = ac instanceof AlignmentI ? ac : ac
-            .getContext();
+    AnnotatedCollectionI alcontext = ac instanceof AlignmentI ? ac
+            : ac.getContext();
     if (alcontext == null)
     {
       return false;