X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FStructureSelectionManager.java;fp=src%2Fjalview%2Fstructure%2FStructureSelectionManager.java;h=0209e200bbfb66c32a969eee0479ce6343321da0;hb=cb8e52fbbc5f725e3f7f48c672cdddb0690bd978;hp=e4dc137908b459ec26345310e5251d8ac5e69098;hpb=1c721468246c2aafd86fc52d954512374f576b11;p=jalview.git diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java index e4dc137..0209e20 100644 --- a/src/jalview/structure/StructureSelectionManager.java +++ b/src/jalview/structure/StructureSelectionManager.java @@ -34,7 +34,7 @@ import java.util.Vector; import jalview.analysis.AlignSeq; import jalview.api.StructureSelectionManagerProvider; -import jalview.bin.Cache; +import jalview.bin.Console; import jalview.commands.CommandI; import jalview.commands.EditCommand; import jalview.commands.OrderCommand; @@ -441,8 +441,8 @@ public class StructureSelectionManager } catch (SiftsException e) { isMapUsingSIFTs = false; - Cache.error("SIFTS mapping failed", e); - Cache.error("Falling back on Needleman & Wunsch alignment"); + Console.error("SIFTS mapping failed", e); + Console.error("Falling back on Needleman & Wunsch alignment"); siftsClient = null; } @@ -556,7 +556,7 @@ public class StructureSelectionManager } catch (SiftsException e) { // fall back to NW alignment - Cache.error(e.getMessage()); + Console.error(e.getMessage()); StructureMapping nwMapping = getNWMappings(seq, pdbFile, targetChainId, maxChain, pdb, maxAlignseq); seqToStrucMapping.add(nwMapping);