X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructure%2FStructureSelectionManager.java;h=871f076bfe05cfd2c2bbf78f776743ee052c0d79;hb=a6b324e3f5edac3df0b968f0037b1cc8b651598e;hp=2f962b5422e053a172a1e5800f59422fca76915a;hpb=5b079109d33a4596a8c3017dbf93b7de5b0300c5;p=jalview.git

diff --git a/src/jalview/structure/StructureSelectionManager.java b/src/jalview/structure/StructureSelectionManager.java
index 2f962b5..871f076 100644
--- a/src/jalview/structure/StructureSelectionManager.java
+++ b/src/jalview/structure/StructureSelectionManager.java
@@ -47,10 +47,8 @@ import java.util.Collections;
 import java.util.Enumeration;
 import java.util.HashMap;
 import java.util.IdentityHashMap;
-import java.util.LinkedHashSet;
 import java.util.List;
 import java.util.Map;
-import java.util.Set;
 import java.util.Vector;
 
 import MCview.Atom;
@@ -78,7 +76,7 @@ public class StructureSelectionManager
   /*
    * Set of any registered mappings between (dataset) sequences.
    */
-  public Set<AlignedCodonFrame> seqmappings = new LinkedHashSet<AlignedCodonFrame>();
+  private List<AlignedCodonFrame> seqmappings = new ArrayList<AlignedCodonFrame>();
 
   private List<CommandListener> commandListeners = new ArrayList<CommandListener>();
 
@@ -1017,13 +1015,13 @@ public class StructureSelectionManager
   /**
    * Add each of the given codonFrames to the stored set, if not aready present.
    * 
-   * @param set
+   * @param mappings
    */
-  public void registerMappings(Set<AlignedCodonFrame> set)
+  public void registerMappings(List<AlignedCodonFrame> mappings)
   {
-    if (set != null)
+    if (mappings != null)
     {
-      for (AlignedCodonFrame acf : set)
+      for (AlignedCodonFrame acf : mappings)
       {
         registerMapping(acf);
       }
@@ -1261,4 +1259,9 @@ public class StructureSelectionManager
     progressIndicator.setProgressBar(message, progressSessionId);
   }
 
+  public List<AlignedCodonFrame> getSequenceMappings()
+  {
+    return seqmappings;
+  }
+
 }