X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructures%2Fmodels%2FAAStructureBindingModel.java;fp=src%2Fjalview%2Fstructures%2Fmodels%2FAAStructureBindingModel.java;h=9f4cea03736531ce3371e702969eaaea58ae5d8f;hb=be762d8d9c71a7aa3121e845c45911c7192b7827;hp=16376319e24c97b9ae40d3cd908eb7bcc19cd880;hpb=d1bb7a31fc091606aedbc255a5766ac79e36fa91;p=jalview.git

diff --git a/src/jalview/structures/models/AAStructureBindingModel.java b/src/jalview/structures/models/AAStructureBindingModel.java
index 1637631..9f4cea0 100644
--- a/src/jalview/structures/models/AAStructureBindingModel.java
+++ b/src/jalview/structures/models/AAStructureBindingModel.java
@@ -53,9 +53,9 @@ import java.util.List;
  * @author gmcarstairs
  *
  */
-public abstract class AAStructureBindingModel extends
-        SequenceStructureBindingModel implements StructureListener,
-        StructureSelectionManagerProvider
+public abstract class AAStructureBindingModel
+        extends SequenceStructureBindingModel
+        implements StructureListener, StructureSelectionManagerProvider
 {
 
   private StructureSelectionManager ssm;
@@ -300,7 +300,8 @@ public abstract class AAStructureBindingModel extends
     {
       throw new Error(MessageManager.formatMessage(
               "error.implementation_error_no_pdbentry_from_index",
-              new Object[] { Integer.valueOf(pe).toString() }));
+              new Object[]
+              { Integer.valueOf(pe).toString() }));
     }
     final String nullChain = "TheNullChain";
     List<SequenceI> s = new ArrayList<SequenceI>();
@@ -638,8 +639,8 @@ public abstract class AAStructureBindingModel extends
 
     if (waiting)
     {
-      System.err
-              .println("Timed out waiting for structure viewer to load file "
+      System.err.println(
+              "Timed out waiting for structure viewer to load file "
                       + notLoaded);
       return false;
     }
@@ -657,10 +658,8 @@ public abstract class AAStructureBindingModel extends
         {
           for (SequenceI s : seqs)
           {
-            if (s == seq
-                    || (s.getDatasetSequence() != null && s
-                            .getDatasetSequence() == seq
-                            .getDatasetSequence()))
+            if (s == seq || (s.getDatasetSequence() != null
+                    && s.getDatasetSequence() == seq.getDatasetSequence()))
             {
               return true;
             }
@@ -732,7 +731,8 @@ public abstract class AAStructureBindingModel extends
    * 
    * @return
    */
-  public abstract SequenceRenderer getSequenceRenderer(AlignmentViewPanel alignment);
+  public abstract SequenceRenderer getSequenceRenderer(
+          AlignmentViewPanel alignment);
 
   protected abstract void colourBySequence(
           StructureMappingcommandSet[] colourBySequenceCommands);
@@ -757,9 +757,9 @@ public abstract class AAStructureBindingModel extends
       return;
     }
     String[] files = getStructureFiles();
-  
+
     SequenceRenderer sr = getSequenceRenderer(alignmentv);
-  
+
     StructureMappingcommandSet[] colourBySequenceCommands = getColourBySequenceCommands(
             files, sr, alignmentv);
     colourBySequence(colourBySequenceCommands);