X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fstructures%2Fmodels%2FAAStructureBindingModel.java;fp=src%2Fjalview%2Fstructures%2Fmodels%2FAAStructureBindingModel.java;h=f1f2d307d4014f0a1424017e5a84a470d0561c6b;hb=05e40b4dd4e216024024fb921d797917d74daa76;hp=748381f1743e30a1a27f3577c8f723bf3e3197aa;hpb=8f08ed712138cea8987594a62b6053a0bfdba327;p=jalview.git

diff --git a/src/jalview/structures/models/AAStructureBindingModel.java b/src/jalview/structures/models/AAStructureBindingModel.java
index 748381f..f1f2d30 100644
--- a/src/jalview/structures/models/AAStructureBindingModel.java
+++ b/src/jalview/structures/models/AAStructureBindingModel.java
@@ -1075,7 +1075,10 @@ public abstract class AAStructureBindingModel
    * executed.
    * <p>
    * If a reply is wanted, the execution is done synchronously (waits),
-   * otherwise it is done in a separate thread (doesn't wait).
+   * otherwise it is done in a separate thread (doesn't wait). WARNING: if you
+   * are sending commands that need to execute before later calls to
+   * executeCommand (e.g. mouseovers, which clean up after previous ones) then
+   * set getReply true to ensure that commands are not executed out of order.
    * 
    * @param getReply
    * @param msg