X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Futil%2FDBRefUtils.java;fp=src%2Fjalview%2Futil%2FDBRefUtils.java;h=b9939e6437720485175f1777e269b59244701ca3;hb=9f20cd3f523c61db9fa6c44022d50baa692356f4;hp=50a34fc9b5017cc4000f6d28c018b8d8a93f9a43;hpb=446058de46699818a4d8cb965259e0eabd0d9c0a;p=jalview.git

diff --git a/src/jalview/util/DBRefUtils.java b/src/jalview/util/DBRefUtils.java
index 50a34fc..b9939e6 100755
--- a/src/jalview/util/DBRefUtils.java
+++ b/src/jalview/util/DBRefUtils.java
@@ -65,6 +65,9 @@ public class DBRefUtils
     canonicalSourceNameLookup.put("ensembl-tr", DBRefSource.ENSEMBL);
     canonicalSourceNameLookup.put("ensembl-gn", DBRefSource.ENSEMBL);
 
+    canonicalSourceNameLookup.put("ensemblgenomes",
+            DBRefSource.ENSEMBLGENOMES);
+
     // Make sure we have lowercase entries for all canonical string lookups
     Set<String> keys = canonicalSourceNameLookup.keySet();
     for (String k : keys)
@@ -160,6 +163,20 @@ public class DBRefUtils
       return null;
     }
     String canonical = canonicalSourceNameLookup.get(source.toLowerCase());
+    if (canonical==null)
+    {
+      if (source.toLowerCase().startsWith("ensembl"))
+      {
+        canonical = DBRefSource.ENSEMBL;
+        for (String ensembls: new String[] { "Protists","Plants","Bacteria","Fungi","Metazoa"})
+        {
+          if (source.toLowerCase().endsWith(ensembls.toLowerCase()))
+          {
+            canonical = DBRefSource.ENSEMBLGENOMES;
+          }
+        }
+      }
+    }
     return canonical == null ? source : canonical;
   }