X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fviewmodel%2FAlignmentViewport.java;h=57258efaa47c684ba476c194aaa24100637224b3;hb=0eb7bbd7c1c29eae73f872693ae033003be1031c;hp=254a20188adec26e8a05db4b053e17fe5673e61b;hpb=494a321d41897be1492b973fdb37fa4ccb0ec94e;p=jalview.git diff --git a/src/jalview/viewmodel/AlignmentViewport.java b/src/jalview/viewmodel/AlignmentViewport.java index 254a201..57258ef 100644 --- a/src/jalview/viewmodel/AlignmentViewport.java +++ b/src/jalview/viewmodel/AlignmentViewport.java @@ -1867,7 +1867,7 @@ public abstract class AlignmentViewport implements AlignViewportI, cs.setConsensus(hconsensus); if (cs.conservationApplied()) { - cs.setConservation(Conservation.calculateConservation("All", 3, + cs.setConservation(Conservation.calculateConservation("All", alignment.getSequences(), 0, alignment.getWidth(), false, getConsPercGaps(), false)); }