X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fviewmodel%2FViewportRanges.java;h=b96ac2829e20f52ec0a435ea817078dbdcd5bfbc;hb=edeca22444e251f45ce730542b4dc2187bb95b63;hp=8c137b894a5ebe2389ca3a0c04304df4ec9c7d58;hpb=8f56b5317ff932c05d9a98cb43134ec69ddd1b36;p=jalview.git

diff --git a/src/jalview/viewmodel/ViewportRanges.java b/src/jalview/viewmodel/ViewportRanges.java
index 8c137b8..b96ac28 100644
--- a/src/jalview/viewmodel/ViewportRanges.java
+++ b/src/jalview/viewmodel/ViewportRanges.java
@@ -112,7 +112,7 @@ public class ViewportRanges extends ViewportProperties
    * Set first residue visible in the viewport, and retain the current width.
    * Fires a property change event.
    * 
-   * @param res
+   * @param res 
    *          residue position
    */
   public void setStartRes(int res)
@@ -262,38 +262,15 @@ public class ViewportRanges extends ViewportProperties
   private int[] updateStartEndSeq(int start, int end)
   {
 
-    if (end == 3 && this.endSeq == 14 || end == 13 && this.endSeq == 3) {
-      new NullPointerException().printStackTrace(System.out);
-      System.out.println("ViewportRange updateStartEndSeq " + start + " " + end + " " + Thread.currentThread());
-    }
+//    if (end == 3 && this.endSeq == 14 || end == 13 && this.endSeq == 3) {
+//      new NullPointerException().printStackTrace(System.out);
+//      System.out.println("ViewportRange updateStartEndSeq " + start + " " + end + " " + Thread.currentThread());
+//    }
     int oldstartseq = this.startSeq;
-    int visibleHeight = getVisibleAlignmentHeight();
-    if (start > visibleHeight - 1)
-    {
-      startSeq = Math.max(visibleHeight - 1, 0);
-    }
-    else if (start < 0)
-    {
-      startSeq = 0;
-    }
-    else
-    {
-      startSeq = start;
-    }
-
     int oldendseq = this.endSeq;
-    if (end >= visibleHeight)
-    {
-      endSeq = Math.max(visibleHeight - 1, 0);
-    }
-    else if (end < 0)
-    {
-      endSeq = 0;
-    }
-    else
-    {
-      endSeq = end;
-    }
+    int max = getVisibleAlignmentHeight() - 1;
+    startSeq = Math.max(0,  Math.min(start, max));
+    endSeq = Math.max(0, Math.min(end, max));
     return new int[] { oldstartseq, oldendseq };
   }
 
@@ -408,21 +385,15 @@ public class ViewportRanges extends ViewportProperties
    */
   public void setViewportStartAndWidth(int start, int w)
   {
-    int vpstart = start;
-    if (vpstart < 0)
-    {
-      vpstart = 0;
-    }
-
-    /*
-     * if not wrapped, don't leave white space at the right margin
-     */
+    int vpstart = Math.max(0, start);
+     
     if (!wrappedMode)
     {
-      if ((w <= getVisibleAlignmentWidth())
-              && (vpstart + w - 1 > getVisibleAlignmentWidth() - 1))
+      // if not wrapped, don't leave white space at the right margin
+      int maxStart = getVisibleAlignmentWidth() - w;
+      if (maxStart >= 0)
       {
-        vpstart = getVisibleAlignmentWidth() - w;
+        vpstart = Math.min(vpstart, maxStart);
       }
 
     }
@@ -441,22 +412,15 @@ public class ViewportRanges extends ViewportProperties
    */
   public void setViewportStartAndHeight(int start, int h)
   {
-    int vpstart = start;
-
-    int visHeight = getVisibleAlignmentHeight();
-    if (vpstart < 0)
+    int vpstart = Math.max(0, start);
+    int maxStart = getVisibleAlignmentHeight() - h;
+    if (maxStart > 0)
     {
-      vpstart = 0;
+      // can't start higher than vertical extent will allow
+      // (viewport height is less than the full alignment
+      // and we are running off the bottom)
+      vpstart = Math.min(vpstart, maxStart);
     }
-    else if (h <= visHeight && vpstart + h > visHeight)
-    // viewport height is less than the full alignment and we are running off
-    // the bottom
-    {
-      vpstart = visHeight - h;
-    }
-    // System.out.println("ViewportRanges setviewportStartAndHeight " + vpstart
-    // + " " + start + " " + h + " " + getVisibleAlignmentHeight());
-
     setStartEndSeq(vpstart, vpstart + h - 1);
   }