X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fworkers%2FAnnotationWorker.java;fp=src%2Fjalview%2Fworkers%2FAnnotationWorker.java;h=4d81307a2a6598d97cd39b1a03312832428858b6;hb=6d2246e02a1232760ec873f9b6ee4a775c6b4b7d;hp=65603d689af04d246aa9874c01e2d4ce2f7ffb10;hpb=0580d6486ec69ff7a9bc8b406cb3703afaca767c;p=jalview.git

diff --git a/src/jalview/workers/AnnotationWorker.java b/src/jalview/workers/AnnotationWorker.java
index 65603d6..4d81307 100644
--- a/src/jalview/workers/AnnotationWorker.java
+++ b/src/jalview/workers/AnnotationWorker.java
@@ -79,7 +79,7 @@ class AnnotationWorker extends AlignCalcWorker
         return;
       }
 
-      removeAnnotation();
+      // removeAnnotation();
       AlignmentI alignment = alignViewport.getAlignment();
       if (alignment != null)
       {
@@ -89,10 +89,19 @@ class AnnotationWorker extends AlignCalcWorker
                   alignment, new FeatureRenderer(alignViewport));
           for (AlignmentAnnotation ann : anns)
           {
-            ann.showAllColLabels = true;
-            ann.graph = AlignmentAnnotation.BAR_GRAPH;
-            ourAnnots.add(ann);
-            alignment.addAnnotation(ann);
+            AlignmentAnnotation theAnn = alignment.findOrCreateAnnotation(
+                    ann.label, ann.description, false, null, null);
+            theAnn.showAllColLabels = true;
+            theAnn.graph = AlignmentAnnotation.BAR_GRAPH;
+            theAnn.scaleColLabel = true;
+            theAnn.annotations = ann.annotations;
+            setGraphMinMax(theAnn, theAnn.annotations);
+            theAnn.validateRangeAndDisplay();
+            if (!ourAnnots.contains(theAnn))
+            {
+              ourAnnots.add(theAnn);
+            }
+            // alignment.addAnnotation(ann);
           }
         } catch (IndexOutOfBoundsException x)
         {