X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fworkers%2FConsensusThread.java;fp=src%2Fjalview%2Fworkers%2FConsensusThread.java;h=debe45d81fad11be9142e0afc87f8789e855547a;hb=75d5069a8e8942343a999fe4d474079856fbc5d3;hp=b6c7a91cffac2963547b143266fa5ed640e6b7f5;hpb=8b1e1c7cf7bcf6499dad546699c85d8d52e6d86c;p=jalview.git

diff --git a/src/jalview/workers/ConsensusThread.java b/src/jalview/workers/ConsensusThread.java
index b6c7a91..debe45d 100644
--- a/src/jalview/workers/ConsensusThread.java
+++ b/src/jalview/workers/ConsensusThread.java
@@ -200,7 +200,8 @@ public class ConsensusThread extends AlignCalcWorker
   {
 
     long nseq = getSequences().length;
-    AAFrequency.completeConsensus(consensusAnnotation, hconsensus, 0,
+    AAFrequency.completeConsensus(consensusAnnotation, hconsensus,
+            hconsensus.getStartColumn(),
             hconsensus.getEndColumn() + 1,
             alignViewport.isIgnoreGapsConsensus(),
             alignViewport.isShowSequenceLogo(), nseq);