X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fworkers%2FConsensusThread.java;fp=src%2Fjalview%2Fworkers%2FConsensusThread.java;h=f94045096f3023009ed803ecfcea60234314814b;hb=d10280f7592e21f1ed4d1030d3ece3e95f3b385b;hp=c754ee3e439fccaaa639548b5836ca5c1d01cca1;hpb=cc6d26d2738c5854ef81ce6787d66564c2281220;p=jalview.git

diff --git a/src/jalview/workers/ConsensusThread.java b/src/jalview/workers/ConsensusThread.java
index c754ee3..f940450 100644
--- a/src/jalview/workers/ConsensusThread.java
+++ b/src/jalview/workers/ConsensusThread.java
@@ -158,7 +158,7 @@ public class ConsensusThread extends AlignCalcWorker implements
             && hconsensus != null)
     {
       AAFrequency.completeConsensus(consensus, hconsensus, 0,
-              hconsensus.length, alignViewport.getIgnoreGapsConsensus(),
+              hconsensus.length, alignViewport.isIgnoreGapsConsensus(),
               alignViewport.isShowSequenceLogo(), nseq);
     }
   }