X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2FDasSequenceFeatureFetcher.java;fp=src%2Fjalview%2Fws%2FDasSequenceFeatureFetcher.java;h=4d3dd2f5a03f3eead2a26eac912ee42f75796b78;hb=2595e9d4ee0dbbd3406a98c4e49a61ccde806479;hp=7e069e3d7b4feeef15d19c691b7059f258729537;hpb=e20075ba805d744d7cc4976e2b8d5e5840fb0a8d;p=jalview.git

diff --git a/src/jalview/ws/DasSequenceFeatureFetcher.java b/src/jalview/ws/DasSequenceFeatureFetcher.java
index 7e069e3..4d3dd2f 100644
--- a/src/jalview/ws/DasSequenceFeatureFetcher.java
+++ b/src/jalview/ws/DasSequenceFeatureFetcher.java
@@ -28,6 +28,7 @@ import jalview.datamodel.SequenceI;
 import jalview.gui.AlignFrame;
 import jalview.gui.Desktop;
 import jalview.gui.FeatureSettings;
+import jalview.gui.JvOptionPane;
 import jalview.util.DBRefUtils;
 import jalview.util.MessageManager;
 import jalview.util.UrlLink;
@@ -46,8 +47,6 @@ import java.util.Set;
 import java.util.StringTokenizer;
 import java.util.Vector;
 
-import javax.swing.JOptionPane;
-
 import org.biodas.jdas.client.FeaturesClient;
 import org.biodas.jdas.client.adapters.features.DasGFFAdapter;
 import org.biodas.jdas.client.adapters.features.DasGFFAdapter.GFFAdapter;
@@ -200,21 +199,21 @@ public class DasSequenceFeatureFetcher
     if (checkDbrefs && refCount < sequences.length && uniprotCount > 0)
     {
 
-      int reply = JOptionPane.YES_OPTION;
+      int reply = JvOptionPane.YES_OPTION;
       if (promptFetchDbrefs)
       {
-        reply = JOptionPane
+        reply = JvOptionPane
                 .showInternalConfirmDialog(
                         Desktop.desktop,
                         MessageManager
                                 .getString("info.you_want_jalview_to_find_uniprot_accessions"),
                         MessageManager
                                 .getString("label.find_uniprot_accession_ids"),
-                        JOptionPane.YES_NO_OPTION,
-                        JOptionPane.QUESTION_MESSAGE);
+                        JvOptionPane.YES_NO_OPTION,
+                        JvOptionPane.QUESTION_MESSAGE);
       }
 
-      if (reply == JOptionPane.YES_OPTION)
+      if (reply == JvOptionPane.YES_OPTION)
       {
         Thread thread = new Thread(new FetchDBRefs());
         thread.start();
@@ -618,8 +617,8 @@ public class DasSequenceFeatureFetcher
     }
     af.getFeatureRenderer().featuresAdded();
 
-    int start = af.getViewport().getStartSeq();
-    int end = af.getViewport().getEndSeq();
+    int start = af.getViewport().getRanges().getStartSeq();
+    int end = af.getViewport().getRanges().getEndSeq();
     int index;
     for (index = start; index < end; index++)
     {