X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2FDasSequenceFeatureFetcher.java;h=4262f7ebc9027830e77c337b595bcb2e49709e36;hb=8a6fa9ea9900d0f106529c3f6283e7f9d76dd2cb;hp=ab02baf672889a24e6ae7f51f77f7cb5848793ca;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git diff --git a/src/jalview/ws/DasSequenceFeatureFetcher.java b/src/jalview/ws/DasSequenceFeatureFetcher.java index ab02baf..4262f7e 100644 --- a/src/jalview/ws/DasSequenceFeatureFetcher.java +++ b/src/jalview/ws/DasSequenceFeatureFetcher.java @@ -240,8 +240,7 @@ public class DasSequenceFeatureFetcher } } catch (Exception ex) { - debug( - "Exception whilst setting default feature sources from registry and local preferences.", + debug("Exception whilst setting default feature sources from registry and local preferences.", ex); } } @@ -511,8 +510,8 @@ public class DasSequenceFeatureFetcher for (int i = 0; i < features.length; i++) { // standard DAS feature-> jalview sequence feature transformation - SequenceFeature f = newSequenceFeature(features[i], source - .getNickname()); + SequenceFeature f = newSequenceFeature(features[i], + source.getNickname()); if (!parseSeqFeature(seq, f, features[i], source)) { if (dbref.getMap() != null && f.getBegin() > 0 @@ -615,8 +614,8 @@ public class DasSequenceFeatureFetcher for (int i = 0; i < features.length; i++) { // standard DAS feature-> jalview sequence feature transformation - SequenceFeature f = newSequenceFeature(features[i], source - .getNickname()); + SequenceFeature f = newSequenceFeature(features[i], + source.getNickname()); if (!parseSeqFeature(seq, f, features[i], source)) { // just add as a simple sequence feature @@ -805,8 +804,9 @@ public class DasSequenceFeatureFetcher { } - SequenceFeature f = new SequenceFeature((String) dasfeature - .get("TYPE"), desc, start, end, score, nickname); + SequenceFeature f = new SequenceFeature( + (String) dasfeature.get("TYPE"), desc, start, end, score, + nickname); if (dasfeature.containsKey("LINK")) {