X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FEBIAlfaFold.java;h=672f0ac8ed25d5822c3653c29f3aad86eee30d68;hb=2ee5edd84da7c509efc15d241527fa62093b41c7;hp=bee1ae96707cf8170ea6a02fef7ce63ad22f482e;hpb=a67002917b669aaff650904ec4353f8c70866cc8;p=jalview.git

diff --git a/src/jalview/ws/dbsources/EBIAlfaFold.java b/src/jalview/ws/dbsources/EBIAlfaFold.java
index bee1ae9..672f0ac 100644
--- a/src/jalview/ws/dbsources/EBIAlfaFold.java
+++ b/src/jalview/ws/dbsources/EBIAlfaFold.java
@@ -358,6 +358,14 @@ public class EBIAlfaFold extends EbiFileRetrievedProxy
   }
 
   public static boolean importPaeJSONAsContactMatrixToSequence(
+          AlignmentI pdbAlignment, File paeFile, int index, String seqId)
+          throws FileNotFoundException, IOException, ParseException
+  {
+    return importPaeJSONAsContactMatrixToSequence(pdbAlignment,
+            new FileInputStream(paeFile), index, seqId);
+  }
+
+  public static boolean importPaeJSONAsContactMatrixToSequence(
           AlignmentI pdbAlignment, InputStream pae_input, int index,
           String seqId) throws IOException, ParseException
   {
@@ -431,10 +439,17 @@ public class EBIAlfaFold extends EbiFileRetrievedProxy
   }
 
   public static boolean importPaeJSONAsContactMatrixToStructure(
+          StructureMapping sm, File paeFile)
+          throws FileNotFoundException, IOException, ParseException
+  {
+    return importPaeJSONAsContactMatrixToStructure(sm,
+            new FileInputStream(paeFile));
+  }
+
+  public static boolean importPaeJSONAsContactMatrixToStructure(
           StructureMapping sm, InputStream paeInput)
           throws IOException, ParseException
   {
-
     JSONObject pae_obj = parseJSONtoPAEContactMatrix(paeInput);
     if (pae_obj == null)
     {