X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FEBIAlfaFold.java;h=fd10c794f0a095fcfa5c561d2d9f3129da813651;hb=beb2fee66dde629e3bbb7febb38d0116e1a64df2;hp=a734f52fca94e86a3a7e62ffa17d26cb5aee82c1;hpb=4b7d3640209c4434d569c746672cf9eed4250ace;p=jalview.git

diff --git a/src/jalview/ws/dbsources/EBIAlfaFold.java b/src/jalview/ws/dbsources/EBIAlfaFold.java
index a734f52..fd10c79 100644
--- a/src/jalview/ws/dbsources/EBIAlfaFold.java
+++ b/src/jalview/ws/dbsources/EBIAlfaFold.java
@@ -44,6 +44,7 @@ import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.ContactMatrixI;
 import jalview.datamodel.DBRefEntry;
+import jalview.datamodel.GroupSet;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
@@ -447,7 +448,7 @@ public class EBIAlfaFold extends EbiFileRetrievedProxy
     }
     ContactMatrixI matrix = new PAEContactMatrix(sequence,
             (Map<String, Object>) paeDict);
-    ((PAEContactMatrix) matrix).makeGroups(5f, true);
+    matrix.setGroupSet(GroupSet.makeGroups(matrix, 5f, true));
 
     AlignmentAnnotation cmannot = sequence.addContactList(matrix);
     if (label != null)
@@ -505,8 +506,8 @@ public class EBIAlfaFold extends EbiFileRetrievedProxy
     SequenceI seq = sm.getSequence();
     ContactMatrixI matrix = new PAEContactMatrix(seq,
             (Map<String, Object>) pae_obj);
-    ((PAEContactMatrix) matrix).makeGroups(5f, true);
-    AlignmentAnnotation cmannot = seq.addContactList(matrix);
+    matrix.setGroupSet(GroupSet.makeGroups(matrix, 5f, true));
+    AlignmentAnnotation cmannot = sm.getSequence().addContactList(matrix);
     /* this already happens in Sequence.addContactList()
      seq.addAlignmentAnnotation(cmannot);
      */