X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FEmblXmlSource.java;fp=src%2Fjalview%2Fws%2Fdbsources%2FEmblXmlSource.java;h=ca90d6085bb23c37339ba31a94bf3a2cf40a20ad;hb=88bc41a8d340988625001b2828625c1a668cadd9;hp=b2fb8081b0d74ee0155dadc25bf06824548e9277;hpb=4efe5c8d36740fc15d862edd5b121c56df7f1c94;p=jalview.git diff --git a/src/jalview/ws/dbsources/EmblXmlSource.java b/src/jalview/ws/dbsources/EmblXmlSource.java index b2fb808..ca90d60 100644 --- a/src/jalview/ws/dbsources/EmblXmlSource.java +++ b/src/jalview/ws/dbsources/EmblXmlSource.java @@ -69,8 +69,8 @@ public abstract class EmblXmlSource extends EbiFileRetrievedProxy { stopQuery(); throw new Exception(MessageManager.formatMessage( - "exception.ebiembl_retrieval_failed_on", new String[] { - emprefx.toLowerCase(), query.trim() }), e); + "exception.ebiembl_retrieval_failed_on", new String[] + { emprefx.toLowerCase(), query.trim() }), e); } return getEmblSequenceRecords(emprefx, query, reply); } @@ -91,7 +91,7 @@ public abstract class EmblXmlSource extends EbiFileRetrievedProxy File reply) throws Exception { EmblFile efile = null; - List seqs = new ArrayList(); + List seqs = new ArrayList<>(); if (reply != null && reply.exists()) { @@ -107,7 +107,7 @@ public abstract class EmblXmlSource extends EbiFileRetrievedProxy * EmbFile reads something like (e.g.) this ungrammatical phrase * Entry: display type is either not supported or entry is not found. */ - List peptides = new ArrayList(); + List peptides = new ArrayList<>(); if (efile != null && efile.getEntries() != null) { for (EmblEntry entry : efile.getEntries())