X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fws%2Fdbsources%2FPdb.java;fp=src%2Fjalview%2Fws%2Fdbsources%2FPdb.java;h=c75a36f9d9c78b8a5913572943171802c9c66ab0;hb=fe72160257543fca39f7959fc1347665e95764a2;hp=76e8351066a5f737661176f615ef6cd18d763d8d;hpb=4609be9dc7b290edf0c2fbcad9e6b6fc7f919d18;p=jalview.git diff --git a/src/jalview/ws/dbsources/Pdb.java b/src/jalview/ws/dbsources/Pdb.java index 76e8351..c75a36f 100644 --- a/src/jalview/ws/dbsources/Pdb.java +++ b/src/jalview/ws/dbsources/Pdb.java @@ -20,28 +20,23 @@ */ package jalview.ws.dbsources; -import jalview.datamodel.Alignment; import jalview.datamodel.AlignmentAnnotation; +import jalview.datamodel.AlignmentI; import jalview.datamodel.DBRefEntry; import jalview.datamodel.DBRefSource; import jalview.datamodel.PDBEntry; import jalview.datamodel.SequenceI; +import jalview.io.FormatAdapter; +import jalview.util.MessageManager; +import jalview.ws.ebi.EBIFetchClient; +import jalview.ws.seqfetcher.DbSourceProxy; import java.util.ArrayList; import java.util.List; import java.util.Vector; -import MCview.PDBChain; -import MCview.PDBfile; - import com.stevesoft.pat.Regex; -import jalview.datamodel.AlignmentI; -import jalview.io.FormatAdapter; -import jalview.util.MessageManager; -import jalview.ws.ebi.EBIFetchClient; -import jalview.ws.seqfetcher.DbSourceProxy; - /** * @author JimP * @@ -145,11 +140,11 @@ public class Pdb extends EbiFileRetrievedProxy implements DbSourceProxy { String chid = null; // Mapping map=null; - for (PDBEntry pid : (Vector) pdbcs.getPDBId()) + for (PDBEntry pid : pdbcs.getPDBId()) { if (pid.getFile() == file) { - chid = (String) pid.getProperty().get("CHAIN"); + chid = pid.getChainCode(); } ;